| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3308 |
|---|
| Symbol | |
|---|
| ID | 6161537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3674579 |
|---|
| End bp | 3675460 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641666083 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001792331 |
|---|
| Protein GI | 171059982 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCTGC AACACATCCC GCCGATCCAG TGCCTGCTGA CCTTCGAGGC GGTCGCCCGC
CTGCGCAATG CCAGTCGGGC GGCTGACGAG CTGTGCGTCA CGCCCAGTGC CATCAGCCAC
CGCATCCGCC AGCTCGAGTC GCACCTGGGC GTGAAGCTGT TCGGCCGCAA CGACTTCACG
CTGACCGCCG ACGGCGTGGC CTATCTGGCC AATGTGCGTG CCGGGCTGGC GGCCTTCGGG
CAGATGCCGT CGCGGCGGGC CGAGCGGGGT GCCACGCGGC TGCGGGTGGC GGTCACGCCG
ACCTTCTGCC GCCAGCTGGT GATGCCCAAG CTGGAGCTGT TCCGCAACGC CTACCCGGAC
GTCGAGCTGA TCATGCAGGT GTCGATACCG CTGCTCGACG TGACGGCCGA GAAGGCCGAT
CTGGTGGTGC GTTTCGGCGC CGGCGGCTAC ACCGACCTCG AGCACCGGCT GATCCTGAGC
GAAGCGGTCA CGCCGGCCTG CAGCCCGAGC TATCTCAACG AGTTCGGCCC CTACGCCGGT
TTTGCCAGCG ACGCCGAGCT GGCCGAGGCG CGCCTGATCC GCAGCCCGCT GGAGCCCTGG
AGCACCTGGT TCACGCACTG CGGCCTGGCT CGGCCGGAGC CGCAGGTGGG CTCGCAGTTC
AACGACCTGG GGCTGGTGTA CGACGCGGCG GCGTCGGGTT TCGGCGTCGC GCTGGTGCGG
TTGGGGCTGG GCGCGGCCTG GTTCGACAGC GGCCGCCTGG TGCGGCTGTC GCCGCAGGTG
GTGGCCTCGC CGATGCGCCA CTACATCTGC TGGCAGCCCG GCGCACTCGA GCGCTGGGAG
TGCGCGGCCT TCGTCGACTG GCTGACGCAG GCGGTGGGCT GA
|
|---|
| Protein sequence | MALQHIPPIQ CLLTFEAVAR LRNASRAADE LCVTPSAISH RIRQLESHLG VKLFGRNDFT
LTADGVAYLA NVRAGLAAFG QMPSRRAERG ATRLRVAVTP TFCRQLVMPK LELFRNAYPD
VELIMQVSIP LLDVTAEKAD LVVRFGAGGY TDLEHRLILS EAVTPACSPS YLNEFGPYAG
FASDAELAEA RLIRSPLEPW STWFTHCGLA RPEPQVGSQF NDLGLVYDAA ASGFGVALVR
LGLGAAWFDS GRLVRLSPQV VASPMRHYIC WQPGALERWE CAAFVDWLTQ AVG
|
|---|
| |