| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3296 |
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| Symbol | |
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| ID | 6162293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3662602 |
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| End bp | 3663378 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666071 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001792319 |
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| Protein GI | 171059970 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAGC TGCCCGTTCT CTGGCGTGAT GAACACCTGA TCGCCATCCA CAAACCCGCC
CGCTGGCTGG TGCACCGCAC GGGCTTGGAC GCAGGCGAAA CCCGGTTCAT CGTCCAGACC
CTGCGCGATC AGCTGGGCGG CCAGCACGTC TACCCCGCGC ACCGGTTGGA CAAGGGCACT
TGCGGCGTGC TGCTGCTGGC GCTGCACCCC GAAGCCGCGC GCGGCTTGGC GATGTCCTTC
GCCCGCCACG AGGTGAAGAA ACGCTACCTG GCGCTGGTGC GCGGCTGGAT GCCGGCAGAA
GTTGAAGTCG ACCATCCGCT GCGCCCCGAC GACACGCCGC CCGACAGCCC GGCGCAATCC
GCCCACACCC GCTTGCGCCG CTTGGCGGCG CTGGACTGGC CCGAGGCCGC CGACCCTGGC
TTCACCACCA CCCGCGCCAG CCTGGTCGAA GCCAGGCCCA CCACCGGCCG GCGCCACCAG
ATCCGCCGCC ACCTGAAACA CATCGCCCAC CCGATCCTGG GCGACGCCAC GCACGGCAAA
GGCCCGCTCA ACCGCTGGTG GGCCGAGCGC CTGGGCCTGC AGCGGCTGTG GCTGCACGCG
TGGCGCCTGC AGATCGCGCA TCCGATCACG GGCGAAGCGC TCGACCTGCA CAGCGGCCTG
CAGTGGGACG GCTGCCGCCT GAGCGTGGCG CCAGACGGGC CGCAGGATCT GCAGGACTGG
CAGCGCGTCC TGGCGGCGCC AGCCTGGTCA CCGGGCATCA AGCCACCGGC TGCTTGA
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| Protein sequence | MTELPVLWRD EHLIAIHKPA RWLVHRTGLD AGETRFIVQT LRDQLGGQHV YPAHRLDKGT
CGVLLLALHP EAARGLAMSF ARHEVKKRYL ALVRGWMPAE VEVDHPLRPD DTPPDSPAQS
AHTRLRRLAA LDWPEAADPG FTTTRASLVE ARPTTGRRHQ IRRHLKHIAH PILGDATHGK
GPLNRWWAER LGLQRLWLHA WRLQIAHPIT GEALDLHSGL QWDGCRLSVA PDGPQDLQDW
QRVLAAPAWS PGIKPPAA
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