| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3295 |
|---|
| Symbol | |
|---|
| ID | 6162292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3660148 |
|---|
| End bp | 3662580 |
|---|
| Gene Length | 2433 bp |
|---|
| Protein Length | 810 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641666070 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_001792318 |
|---|
| Protein GI | 171059969 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGTTCGC TGCTGAAGTC GAAGCCGCTG CGGCACATCG CGTCTGCACT GCGCCGGGCC
GCCGGCAGGC TGCACGAACG CAGCAGCCTG CGTCGCCTGA GCAGCGGCCT GCTCCTCACG
ATGGCGGCCG GCCTGCTGGT GCCGGCGCTG GTCGGGGTCA CGGCATTGAC CGAGCTGCGT
CAGAAGCAGA TCGACCAGGA ACTGGTCGAC AAGCTCGAGA ACACGGCCGT CCTGCTCGGC
AGCAGCCTGG TGGTGCCGGC CTGGAACTAC GACATCCAGG GCATGACCCG CATCACCGAA
GCGGCCATGC TGGACCCGCA GGTGGTGCGC ATCACGGTTC GCGATCCGGC CTCGGCGCCA
CTGGTCAGCG TGGAGCAGCC CGAGCGCCGG CGGGGCCGGT CGGTGGTGCA GCGCCAGGAC
ATGCGACTGA GCGGCCAGGT GATCGACAAG ACCGAGGTCG CGGGCAGTGT CGAGATCGAG
TTCGACGACA GCCTGGCACA ACAGCAGTTC AAGAACGATC GGCAGGTCTA CGCCTTCATC
CTGCTGGGGC AGCTGCTGTT GTCGCTGGGC CTGATGCTGG CGGCCCTGCA CCTGTGGGTG
CTCAAGCCGC TGACCAGCCT GAGCGCCTTT TCCAGCCGGG TCGCCGGTGG CGACTTCGAG
CACCCGCTCG ACTGGAGCCG GCCCGATGAA ATCGGCCGTC TGGCGCTGCA GATGGACAAG
ATGCGCGCCG ACCTGAAGAC GTCTTTCGCC GAGCAGCGGG CGATCCTGAC GAACATCGAA
CTGGGCGTCA TCTTCGAGCG CGGCGGGCTG ATCCAGCTGG CCAGCCGCCA GGCCGAGCGC
TCGTTCGGCC ACCCGCCCGG CTTCATGTCG GGCCTGCCGA TCCTGGCGAT CTATCCGGAA
GATGCCCGCG CCGGCATCGC GTCTGCGCGA GCGATGGCGG CCATCGCCAC CGGCGACGGT
CGCCATGAGG AAGAGCTGAT GCTGCACCGC CGTGACGGCT CGCAGTTCTG GGCCCATCTG
CGCGTCCGCC AGCTCGATCC GGCCCAGCCC CAGGCCGGCT GCATCTGGGT CATCGAGGAC
ATCTCGGCGC GCAAGGCGGT CGAAGACGAA GTCAACCGGC TGGCCTTCTA TGACCCGCTG
ACCCAGCTGC CCAATCGCCG CCTGCTGCGC GACCGCCTCG CCCAAGCCCT GGCGGCCAGC
GCCCGCAGCG GCATGCACGG GGCGCTGATC TTCATCGATC TCGACAATTT CAAGAGCCTC
AACGACACCC TCGGGCACGC GCGCGGCGAC CAGCTGCTCA AGCTGGTGGG CCAGCGCCTG
ACGCATTGCG TGCGCGAGAG CGACACCGTG GCCCGGCTCG GCGGCGACGA GTTCGTCGTC
ATCGTGCAGG ACCTCGGCGC CCGCCTCGAC GAGTGCGCCA CCCAGGCCGA AGGGGTGGGC
GAGAAGATCC TCGACGCACT CAACCAACCC TACCCGCTCG ACGGCCATGT GCGCCACAGC
ACGCCCAGCA TCGGCATCAC CTTGTTCGCC GACGACCGCG ACAGCGTCGA CGACCTGCTC
AAGGAGGCCG ACATGGCGAT GTACCAGGCC AAGACCGCCG GCCGCAACAC GCTGCGTTTC
TTCGACGCCG ACATGCAGGC CATGCTGGTG CAGCGGGCGG CGCTGGAGGA GGACATGCGC
GAGTCGATGC GGCTGTCGCA CTTCCTGCTG CACTACCAGC CGCAGGTGGT CGGCTCGGGC
CGCATCACCG GCGCGGAGGT GCTGCTGCGC TGGCCGCATC CGCTGCGCGG CCTGGTGCCG
CCGGCCGAAT TCATCCCGCT GGCCGAAGAC ACCAACCTGA TCACGGCCCT GGGCCACTGG
GTGCTGGAAA CGGCCTGCAA GACGCTGGCG GACTGGTCCG CACAGGACGA CATGAAGCAC
CTGTCGGTGT CGGTCAACGT CAGCGCCAGG CAGTTCCGGC AGCCCCATTT CGTGGCCGAG
GTGATGAGCA TCCTCGAGCG CACCGGTGCC GATCCGCACC TGCTCAAGCT GGAACTGACC
GAAAGCCTGC TGGTGGAGGA CGTCGAGGAC ATCGTCGCCA AGATGTCGGC CCTGAAATCG
CGTGGCGTCG GGTTTTCGCT CGACGATTTC GGCACCGGCT ATTCATCGTT GGCACACCTC
AAACGCCTGC CGCTGGACCA GCTCAAGATC GACCAGAGCT TTGTCCGCGA CATCCTCACC
GACCCGAACG ACCTGGCGAT CGGCCGGATG GTCGTGGCCC TGGCCGACAG CCTGGGACTG
ACCGTCATCG CCGAAGGCGT GGAACTGGCC GCGCAGCGCG AGCTGCTGGC GCAGATCGGC
TGCGACGCCT ACCAGGGCTA CCTGTTCAGC CGGCCCCTGC CCCGCGAGCC GTTCGAGGCC
TGCTGCCGGG CGGCACGGCA GGCCGTGGCC TGA
|
|---|
| Protein sequence | MRSLLKSKPL RHIASALRRA AGRLHERSSL RRLSSGLLLT MAAGLLVPAL VGVTALTELR
QKQIDQELVD KLENTAVLLG SSLVVPAWNY DIQGMTRITE AAMLDPQVVR ITVRDPASAP
LVSVEQPERR RGRSVVQRQD MRLSGQVIDK TEVAGSVEIE FDDSLAQQQF KNDRQVYAFI
LLGQLLLSLG LMLAALHLWV LKPLTSLSAF SSRVAGGDFE HPLDWSRPDE IGRLALQMDK
MRADLKTSFA EQRAILTNIE LGVIFERGGL IQLASRQAER SFGHPPGFMS GLPILAIYPE
DARAGIASAR AMAAIATGDG RHEEELMLHR RDGSQFWAHL RVRQLDPAQP QAGCIWVIED
ISARKAVEDE VNRLAFYDPL TQLPNRRLLR DRLAQALAAS ARSGMHGALI FIDLDNFKSL
NDTLGHARGD QLLKLVGQRL THCVRESDTV ARLGGDEFVV IVQDLGARLD ECATQAEGVG
EKILDALNQP YPLDGHVRHS TPSIGITLFA DDRDSVDDLL KEADMAMYQA KTAGRNTLRF
FDADMQAMLV QRAALEEDMR ESMRLSHFLL HYQPQVVGSG RITGAEVLLR WPHPLRGLVP
PAEFIPLAED TNLITALGHW VLETACKTLA DWSAQDDMKH LSVSVNVSAR QFRQPHFVAE
VMSILERTGA DPHLLKLELT ESLLVEDVED IVAKMSALKS RGVGFSLDDF GTGYSSLAHL
KRLPLDQLKI DQSFVRDILT DPNDLAIGRM VVALADSLGL TVIAEGVELA AQRELLAQIG
CDAYQGYLFS RPLPREPFEA CCRAARQAVA
|
|---|
| |