Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3294 |
Symbol | |
ID | 6162291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3659207 |
End bp | 3660163 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641666069 |
Product | periplasmic binding protein/LacI transcriptional regulator |
Protein accession | YP_001792317 |
Protein GI | 171059968 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGT ACCTCACGTT CCTGTTTGCC TGCTGGGTGC TGTTGTCCAG CGGATCGGCC TGGCCGGCCG ACAACAAGCT CAACATCGTG TTCATTCCCA AGTCCAGCGA CCAGATGTTC TGGGACCTGA TGCGCAATGG CGTGGAGCGC GCCATGCAGG AGGAGGGCCA GATCGACCTG ACCTGGCGGG GCCCGGCCTA CAACGACGAC ACCGATTCGC AGATCCGGAT CCTGCAGTAC TACACGCGAG CGGGTGTGGA CGCCATCGTC ATCACGCCGA CCGACCGCAG CCGGCTGGTC GGCCCGGTCG AGCAGGCGGT CCGGATGGGC ATCAAGGTCG TGGTGGTCGA TTCGGCGCTG GACGGCAGCG GCCACCTCCA ATTCGTCACG ACCGACAACC ACGCCAGCGG CCAGCTGGCG GCGCGACAGC TGGCCGAGCT GATGGGGCAG CGCGGCCGTG TCGTGCTGCT GCGCACCGTG GCGGGCAGCG CGTCCACCGA TGACCGGGCC CGCGGTTTCA TCGACTACCT GTCGGCCAAC GCCCCCGCCA TCTCGATCGT GGCCGACGTG TACGGCGGCG GCTCCGCGGG CAAGGCGCGC CACAGCGCCA GCGCGCTGCT GGCGAAGTCG GCCGACTTCG ACGCCATCTT CGCCGTCAAC GAATCGGCCA CCGACGGCAT GTTGCGAGCC CTGCGCGAAG CGGGCCTGGC CGGGCGCAAG CGCTTCATCG GCTTCGACTC CACGCCCTTC CTGCTGGAGG GGCTCGAAAA GAAGGAAATC GACGGCCTGA TCGTCCAGGA TCCCGACCGC ATGGGCTATC TGGCCATCAA GGCCGTGGTG GCCGCGCTGC GCAACCGGCC GATCAAGGAA AGCGTCATCC ACACCGGCAC GACCCTGGTG ACGCGGGCCA ATTTCCGGCG CCCGGAGATC AAGAAGCTGA TGTGCGTTCG CTGCTGA
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Protein sequence | MKKYLTFLFA CWVLLSSGSA WPADNKLNIV FIPKSSDQMF WDLMRNGVER AMQEEGQIDL TWRGPAYNDD TDSQIRILQY YTRAGVDAIV ITPTDRSRLV GPVEQAVRMG IKVVVVDSAL DGSGHLQFVT TDNHASGQLA ARQLAELMGQ RGRVVLLRTV AGSASTDDRA RGFIDYLSAN APAISIVADV YGGGSAGKAR HSASALLAKS ADFDAIFAVN ESATDGMLRA LREAGLAGRK RFIGFDSTPF LLEGLEKKEI DGLIVQDPDR MGYLAIKAVV AALRNRPIKE SVIHTGTTLV TRANFRRPEI KKLMCVRC
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