Gene Lcho_3294 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3294 
Symbol 
ID6162291 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3659207 
End bp3660163 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content67% 
IMG OID641666069 
Productperiplasmic binding protein/LacI transcriptional regulator 
Protein accessionYP_001792317 
Protein GI171059968 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGT ACCTCACGTT CCTGTTTGCC TGCTGGGTGC TGTTGTCCAG CGGATCGGCC 
TGGCCGGCCG ACAACAAGCT CAACATCGTG TTCATTCCCA AGTCCAGCGA CCAGATGTTC
TGGGACCTGA TGCGCAATGG CGTGGAGCGC GCCATGCAGG AGGAGGGCCA GATCGACCTG
ACCTGGCGGG GCCCGGCCTA CAACGACGAC ACCGATTCGC AGATCCGGAT CCTGCAGTAC
TACACGCGAG CGGGTGTGGA CGCCATCGTC ATCACGCCGA CCGACCGCAG CCGGCTGGTC
GGCCCGGTCG AGCAGGCGGT CCGGATGGGC ATCAAGGTCG TGGTGGTCGA TTCGGCGCTG
GACGGCAGCG GCCACCTCCA ATTCGTCACG ACCGACAACC ACGCCAGCGG CCAGCTGGCG
GCGCGACAGC TGGCCGAGCT GATGGGGCAG CGCGGCCGTG TCGTGCTGCT GCGCACCGTG
GCGGGCAGCG CGTCCACCGA TGACCGGGCC CGCGGTTTCA TCGACTACCT GTCGGCCAAC
GCCCCCGCCA TCTCGATCGT GGCCGACGTG TACGGCGGCG GCTCCGCGGG CAAGGCGCGC
CACAGCGCCA GCGCGCTGCT GGCGAAGTCG GCCGACTTCG ACGCCATCTT CGCCGTCAAC
GAATCGGCCA CCGACGGCAT GTTGCGAGCC CTGCGCGAAG CGGGCCTGGC CGGGCGCAAG
CGCTTCATCG GCTTCGACTC CACGCCCTTC CTGCTGGAGG GGCTCGAAAA GAAGGAAATC
GACGGCCTGA TCGTCCAGGA TCCCGACCGC ATGGGCTATC TGGCCATCAA GGCCGTGGTG
GCCGCGCTGC GCAACCGGCC GATCAAGGAA AGCGTCATCC ACACCGGCAC GACCCTGGTG
ACGCGGGCCA ATTTCCGGCG CCCGGAGATC AAGAAGCTGA TGTGCGTTCG CTGCTGA
 
Protein sequence
MKKYLTFLFA CWVLLSSGSA WPADNKLNIV FIPKSSDQMF WDLMRNGVER AMQEEGQIDL 
TWRGPAYNDD TDSQIRILQY YTRAGVDAIV ITPTDRSRLV GPVEQAVRMG IKVVVVDSAL
DGSGHLQFVT TDNHASGQLA ARQLAELMGQ RGRVVLLRTV AGSASTDDRA RGFIDYLSAN
APAISIVADV YGGGSAGKAR HSASALLAKS ADFDAIFAVN ESATDGMLRA LREAGLAGRK
RFIGFDSTPF LLEGLEKKEI DGLIVQDPDR MGYLAIKAVV AALRNRPIKE SVIHTGTTLV
TRANFRRPEI KKLMCVRC