| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3293 |
|---|
| Symbol | |
|---|
| ID | 6162290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3656422 |
|---|
| End bp | 3659091 |
|---|
| Gene Length | 2670 bp |
|---|
| Protein Length | 889 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641666068 |
|---|
| Product | ATPase, P-type (transporting), HAD superfamily, subfamily IC |
|---|
| Protein accession | YP_001792316 |
|---|
| Protein GI | 171059967 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0474] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01517] plasma-membrane calcium-translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.954514 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCGC AACCCGAGCT CGGCAGATCC GTTCCACCCG CCTGGGATCC GGCGCCGCAC
CTGCAGCCCT CGCACGAGGT CGCGGCCCGT CTGCAGGTCG ACCCCGACCA GGGCCTGGCC
GCCGACGAGG TGCCGCCGCG CCGCGCCCGC CACGGCAGCA ACGCGCTGGC CGCGGCCGCG
CCGCGCAGCG TGGCCTCGCG GCTGATCGCG CCGTTCAAGG ATTTCATGAT CCTGGTGCTG
CTGGCCGCGG CGCTGCTGTC GGGTCTGATC GGCGAGGTGG CCGACACGGT GGCGATCCTG
GTGATCGTGC TGCTCAACGC GGCGCTGTCG ATCAGCCAGG AGTGGCAGGC CGACCGCGCG
CTGGCCGCCC TGCAGCGCCT GGCCGCGCCG CGTGCGCAGG TGCGACGCGA CGGTCAGGAC
CAGGCCATCG ACAGCCACGA ACTGGTGCCC GGCGACGTGG TGCACCTCGA AGCCGGCAAC
CTGGTGCCGG CCGACCTGCG GCTGCACGCG GTGGCGCAGC TGCGCATCGA CGAGTCGGCG
CTGACCGGCG AATCGCTCAC CGTCGACAAA CACAGCGCAC CGCTGCCGGC GGCCGAACAC
GCGCTCGGCG ACCTGCGCAA CATCGCCTTC AAGGGCACGC TCGTCACGCA CGGCCGTGCC
ACCGGCCTGG TGGTGGCCAC CGGCGCAGCC ACCGAGATCG GCCGCATCGC CGCCATGCTC
GACGCCAGCG GCGACCGCAC CACGCCGCTG CAGCGCCGGC TGGCGGCGTT CGGCCAGCGG
CTGTCGGTGG TGGTGCTGGT GATCTGCGCG GTGGTGTTCG GCGTCGGCCT GCTGCGTGGC
GAGGAGCTGC TGCTGATGGC GCTCACATCC ATCAGCCTGG CGGTGGCGGC GATCCCCGAG
GCGCTACCGG CGGTGGCCAC CGTGCTGCTG GCGCTGGGCG CGCGCAAGCT GGTGCTGGTC
AAGGCGCTGG TGCGGCGGCT GCCGGCGGTG GAGTCGCTCG GTTCGGTCAC GACGATCTGC
TCCGACAAGA CCGGCACGCT GACGCTCAAC CGCATGACCG TGAGCACGCA CCAGGCCGCC
AACGACGGTG CCGCGGCGCT GCTGTGGCGC GCCGGCCTGT TGTGCAACGA CGCCGCACCC
TCGCCGCAAG GCTGGCGCGG CGACCCGACC GAAACGGCGG TGGCCGAGCG CGCCGAATCG
GCCGGGCTCG ACGCGGTGGC CGAACGCGCC GCCTGGCCGC GCCGCCACGA GTGGCCGTTC
GATGCCGACC GCAAGCGCAT GAGCACGCTG CACGTGGCGC CCGATGGCTG GGTCGCCTGC
GTCAAGGGCG CGCCCGAGTC GGTGCTGCCG CGCTGCACCT CGGCGTGGGG CGCCGATGGC
GCGCAGCCGA TCGACATCGC GGCCTGGCAG GCCACCGTGC AGGGGCTGGC CGCACAAGGC
CTGCGGGTGC TGGCGCTGGC GCAGCGCGAG GGCTCGATCG ACCGCCTCGA CGCGATGCGG
GCGCTCGACG CCGATCAGGC CGAGCGCGAG CTGGTGTTCC TCGGCCTGGT CGGCCTGATC
GACCCGCCAC GGCCCGAAGC CCGCGACGCC GTGGCCGAGT GCCACAGCGC GGGCGTGCGT
GTCGTGATGA TCACCGGCGA CCACCCGCAG ACGGCGCTGG CGATCGCCAG CCAGCTCGGG
ATCGTCGACG CGGTCGAGGC CGACGAGGCG GCCGATGCCG GCACGACGGG CGCCGCCCGC
CAGGTCATCA GCGGCCCCGA GCTGGCCCGC CTCGACGACC ACGCACTGGC CGCCATGGTG
AGCGACGTGC GCGTCTACGC CCGCATGGAT CCGGCGCAGA AGATCCGCAT CGTGCAGGCG
CTGCAGTCGC GCGGCGAGCT GGTGGCGATG ACCGGCGACG GCGTCAACGA CGCGCCGGCG
CTCAAGGCCG CCGACATCGG CGTGGCGATG GGCCAGGGCG GCACCGACGT GGCGCGCGAG
GCCGCCGGGC TGGTGCTGCT GGACGACAAC TTCGCCACCA TCGTGGCCGC GGTGCGCGAG
GGGCGGCGCA TCTTCGACAA CATCCGCAAG TTCATCCGCT ACGCCATGAC CGGCAACTCG
GCCGAGATCT GGGTGCTGTT CCTGGCGCCG CTGGTCGGGC TGCCGATCCC GCTGCTGCCG
ATCCACATCC TGTGGATCAA CCTCGTCACC GACGGCCTGC CGGGCCTGGC GCTGGCGGCC
GAACCCGGCG AGCGCGGCCT GATGCGCCGC CCGCCGCGCC CGCCCACCGA GAGCGTGTTC
GCGCACGGCC TGTGGCAGCA CGCGCTGCTG GTGGGCATCC TGATCGCCGG ACTGTGCCTG
GGCGTGCAGG CCTGGGCGCT CGAAACCGGC CACGCCCACT GGCAGACGAT GGTGTTCACG
GTGCTGACGC TGGCGCAGAT GGCACACCTG ATGGCGATCC GCTCCGAGGG GCAGTCGATC
ATCTCGCTGG GCCTGCGCAG CAACCGGCCG CTGCTGGGCG CGGTGGCGCT GACATTCGCG
CTGCAGATGG CGGTGATCTA CGTGCCGGTG CTGCAGCCGA TCTTCCGCAC CGAGGCTCTC
AGCGGCGCCG AACTGGCGCT GTGCCTGGCC TGCGCGGCGC TGGTGACGGC CGCGGTCGAG
GCCGAAAAGG CCTGGCGGCG CCGGGCCTGA
|
|---|
| Protein sequence | MTSQPELGRS VPPAWDPAPH LQPSHEVAAR LQVDPDQGLA ADEVPPRRAR HGSNALAAAA
PRSVASRLIA PFKDFMILVL LAAALLSGLI GEVADTVAIL VIVLLNAALS ISQEWQADRA
LAALQRLAAP RAQVRRDGQD QAIDSHELVP GDVVHLEAGN LVPADLRLHA VAQLRIDESA
LTGESLTVDK HSAPLPAAEH ALGDLRNIAF KGTLVTHGRA TGLVVATGAA TEIGRIAAML
DASGDRTTPL QRRLAAFGQR LSVVVLVICA VVFGVGLLRG EELLLMALTS ISLAVAAIPE
ALPAVATVLL ALGARKLVLV KALVRRLPAV ESLGSVTTIC SDKTGTLTLN RMTVSTHQAA
NDGAAALLWR AGLLCNDAAP SPQGWRGDPT ETAVAERAES AGLDAVAERA AWPRRHEWPF
DADRKRMSTL HVAPDGWVAC VKGAPESVLP RCTSAWGADG AQPIDIAAWQ ATVQGLAAQG
LRVLALAQRE GSIDRLDAMR ALDADQAERE LVFLGLVGLI DPPRPEARDA VAECHSAGVR
VVMITGDHPQ TALAIASQLG IVDAVEADEA ADAGTTGAAR QVISGPELAR LDDHALAAMV
SDVRVYARMD PAQKIRIVQA LQSRGELVAM TGDGVNDAPA LKAADIGVAM GQGGTDVARE
AAGLVLLDDN FATIVAAVRE GRRIFDNIRK FIRYAMTGNS AEIWVLFLAP LVGLPIPLLP
IHILWINLVT DGLPGLALAA EPGERGLMRR PPRPPTESVF AHGLWQHALL VGILIAGLCL
GVQAWALETG HAHWQTMVFT VLTLAQMAHL MAIRSEGQSI ISLGLRSNRP LLGAVALTFA
LQMAVIYVPV LQPIFRTEAL SGAELALCLA CAALVTAAVE AEKAWRRRA
|
|---|
| |