| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3271 |
|---|
| Symbol | |
|---|
| ID | 6162906 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3632544 |
|---|
| End bp | 3635489 |
|---|
| Gene Length | 2946 bp |
|---|
| Protein Length | 981 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641666045 |
|---|
| Product | protein of unknown function DUF940 membrane lipoprotein putative |
|---|
| Protein accession | YP_001792294 |
|---|
| Protein GI | 171059945 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0000771318 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGATCCTGC AACCTTCGCC TGTGCTGCGC AAGCTGCGTG CTTGCTGTGT CGGTGGCCTG
CTGGTCTGGG GTGGCACGAC CCTGGCTGTC GGTGCCACGC CTGTCCAGCA GCAGACCATC
CAGACGCCCC AGCGTCTCAG TGCCTGGCTG AACCAGCATC GCGACGAACT GGCCGGGGCC
GATGTCCTGG GCCTGATGTG GCTGGTCGAG AGCGAAAGAG CGGCGCAGGC GCAGGCGCGT
GAACGCCTGC TGGTGCGGCT GGCCGATGTC GCGCGCGAAC GCCGCCGCAG CGGGCTGGCA
ACGCCTGGCA TCGATCGCCT GATCGCCCAG GTCGAGGCCG GCGAGGCGAC CGGGCGGGTG
CTGACGGCCG CGCTCGACGC GCGCTGGCTG GAGGCCAATC CGGCGCGCGA TCCGGTGCTG
CAGCCGGGTG ACCGCCTGCG CTGGGCCGGC CGGCCGGGCA CGGTGCAGGT CCTGGCCGAC
GACGGCCGTC GCTGCGTGCT CGCGCAGCGC GCAGCGGCCC GCGTGCACGA GCTGGTCGAT
GCCTGCCTGG ACGCGCAGTC GGCACGGCCC GACCGGGTGT GGGTGATCCA GCCCGACGGT
CGGGTGCAGC GCCACGGGGT CGCGGCCTGG AACACCGAGC CGCCGCTGCA ACTGGCCCCG
GGCGCGCTGG TCTGGATTCC GCCGGCCGGG ATCGATGCGG CACTGGCCGC CGACGTGGCG
TCCTGGCTGG CCTGGGCGGG GCCGCAGGCC GATCCTGCTG CCGATGCCTC GGACACGGTC
TGGCGCCAGG TCGAGGCGAG CGACGAGCAG CTCGCCGCGC GTCGCCAGGC CCAGGACCTG
GCGGTGCGCA ATCCGCCGAC GCTGAGCGAC TGGGGCTTCA CCGGCCTGCT GCAGACGCCG
ACGGCGCGCA TGCAGCCCGA GGGCGCGCTG TCATTGAGCC TGCAGCGCAC CTGGCCCTAC
ACCCGCACCA ATGTCTTTCT GCAGCCGCTC GAAGACCTCG AGATCGGTTT CCGCTACACC
GCCGTTGCCA ACCGCCTCTA CGGCGCGGTC AATTTCTCCG GCCAGCAGTC CTACAAGGAC
AAGAGCATCG ACGCCAAGCT GCGCCTGCTG CGCGAGGGGG CCTGGTCGCC CGAACTGTCG
GTCGGCATCC TCGACATGGG GGGCACCGGG CTGTTCGGCT CCGAATACCT GGTGGCCAAC
AAGCGCTGGG GCGGGCTTGA CTTCAGCCTC GGCCTGGGCT GGGGCTATCT GGGCCAGCGG
CGCGACCTGC GCAATCCGCT GTCGGCCGTC AGTGCGCGCT TCGATGACCG ACCCGGTGCC
AGCACGCTGA CCGGCCAGGG CGGCACCATC GGCTGGTCGC GCTTCTTCCG CGGCCCGGTC
GGGGTGTTCG GGGGCGTGCA GTTCAGGCCG TCGTCGTGGC CCCTGCTGGT CAAGCTCGAA
CTCGATGGCA ACGACTACCA GTCCGAACCG CAGGCCAATC GACAGCCGCA GAAGTCGCCG
CTCAACCTCG GGCTGGTCTA CCAGCTCAAT CCGACCGTCG ACCTGAGCCT GGGGCTGCAG
CGCGGCAACC GGCTGGCCTT CGGCCTGGCT TTCCACGTGC CGATGGCCGA CTTGAACACG
CCCAAGCTGC TCGACCCGCG ACCGATCGGG GTCAGCCCGC TGCGACCGGT CCAGGCGCCC
GCACTGGCGA CCACGCTGGA CGAGCTGTCG CTCCAGACCG GCTGGGCGCC ACGTGGCGTC
ACTCGGGCAT CGTCGACCGT GGTCGCCGAA TTCGCCGACG TCGATTCGCC CTATCTGCGC
GATCGCCTCG ACAAGTCGCT GCAGGTGCTG CACCGCGATG CACCGGCCGA GGTCGAGCGC
CTGCAGGTCC GGTTCGACGT GCTGGGCCGG CCGGCGCTGC TGGCCGAGGT CGACCGACAA
CCCTGGATGG CAGGCCAGAC CGAGGCGCCA CGCAGCAACA CCGTCGTCGA TGCGGTGCAG
TTGCGCCGCC TCGATGCCGA CGCGGTGCTG CCCGCGGCAC CGGCGCCGCT GGCCGAGGCG
CAGCGCGATC AGAAGCCGCT GTCGCTGCGT CCGTCGATCG ACCTTCACCA GACCATCGGT
GGCCCGAACG GCTTCGTGCT CTTTGACGTC AGCGCCTCGC TGAGGGGCCG GTTGAGCCTG
CCGGCGGACT GGCGGGTCGA CGGGGAGGCG CGGCTGCGGC TGATCGACAA CTACGGCGGC
TTCACCTTCG ATGGCAGCAG CCAGTTGCCA CGTGTGCGCA CCGACATGCG CTCCTACCTG
GTGACCTCGC GCGTCACGCT GGAGCGCCTG GCCCTGTCGC AGGCGCGGGT GCTGACCGGC
AACCAGTACT ACGCCGTCTA CGGCGGCTAC TTCGAGTCGA TGTTCGGCGG AGTCGGCGGC
GAGTGGCTGT ACCGCCGCAA CGGCTCACGC TGGGCCTTCG GCATCGACGC CAACCGGGTG
CGGCAGCGCG ACTTCCACCA GGACCTGCGC TGGCGCGACT ACACCGTCTC GACCGGCCAC
GCCACGCTGT ACTGGGACAC CGGCTGGCAG GGTATCTCGA CCCGGCTCAA CGTCGGCCAG
TACCTCGCCG GCGACCGCGG CGCCACGCTG ACGCTGCAGA AGACCTTCGA CAACGGCACG
ACGATGGCGG TGTTCGCCAC CAAGACCAAT GTCTCGGCCG CCCAGTTCGG CGAAGGTTCG
TTCGACAAGG GCATTTCCCT GTCGATTCCC TTCGACACCT TCCTGCCGCG CTCCAGCAAC
GCCACCGGCC ATTTCCTGTG GCGACCGCTG ACACGTGACG GCGGCGCGAT GCTGGGTCGT
CCGGTCGAGC TCCATCGCGA GACCCGGCTG CTCGATCCGC GCACGCTGGA GCAGCGCGTC
GCGCCCTTGC CCAATCACCT GCTGCCGGTC GACGACCAGC GCCCGACGGG CCAGGCGAGT
CGCTGA
|
|---|
| Protein sequence | MILQPSPVLR KLRACCVGGL LVWGGTTLAV GATPVQQQTI QTPQRLSAWL NQHRDELAGA
DVLGLMWLVE SERAAQAQAR ERLLVRLADV ARERRRSGLA TPGIDRLIAQ VEAGEATGRV
LTAALDARWL EANPARDPVL QPGDRLRWAG RPGTVQVLAD DGRRCVLAQR AAARVHELVD
ACLDAQSARP DRVWVIQPDG RVQRHGVAAW NTEPPLQLAP GALVWIPPAG IDAALAADVA
SWLAWAGPQA DPAADASDTV WRQVEASDEQ LAARRQAQDL AVRNPPTLSD WGFTGLLQTP
TARMQPEGAL SLSLQRTWPY TRTNVFLQPL EDLEIGFRYT AVANRLYGAV NFSGQQSYKD
KSIDAKLRLL REGAWSPELS VGILDMGGTG LFGSEYLVAN KRWGGLDFSL GLGWGYLGQR
RDLRNPLSAV SARFDDRPGA STLTGQGGTI GWSRFFRGPV GVFGGVQFRP SSWPLLVKLE
LDGNDYQSEP QANRQPQKSP LNLGLVYQLN PTVDLSLGLQ RGNRLAFGLA FHVPMADLNT
PKLLDPRPIG VSPLRPVQAP ALATTLDELS LQTGWAPRGV TRASSTVVAE FADVDSPYLR
DRLDKSLQVL HRDAPAEVER LQVRFDVLGR PALLAEVDRQ PWMAGQTEAP RSNTVVDAVQ
LRRLDADAVL PAAPAPLAEA QRDQKPLSLR PSIDLHQTIG GPNGFVLFDV SASLRGRLSL
PADWRVDGEA RLRLIDNYGG FTFDGSSQLP RVRTDMRSYL VTSRVTLERL ALSQARVLTG
NQYYAVYGGY FESMFGGVGG EWLYRRNGSR WAFGIDANRV RQRDFHQDLR WRDYTVSTGH
ATLYWDTGWQ GISTRLNVGQ YLAGDRGATL TLQKTFDNGT TMAVFATKTN VSAAQFGEGS
FDKGISLSIP FDTFLPRSSN ATGHFLWRPL TRDGGAMLGR PVELHRETRL LDPRTLEQRV
APLPNHLLPV DDQRPTGQAS R
|
|---|
| |