Gene Lcho_3268 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3268 
Symbol 
ID6163611 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3627851 
End bp3628924 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content69% 
IMG OID641666042 
Producthomocysteine S-methyltransferase 
Protein accessionYP_001792291 
Protein GI171059942 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0164152 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACACGC CGTCGCCTCA ATCCAATCCG TCGCCCGCCT ACACCCGCGG CGCCCAGTTG 
CCCGCCTTGC TGCAGCAACG CATCCTGGTG CTCGACGGCG CGATGGGCAC GATGGTGCAG
CGCTACAAGC TCGACGAGGC GGCGTTCCGC GGCGAGCGCT TCGCTGATCA CCCGAGCGAC
CTCAAGGGCA ACAACGACCT GCTGGTGCTG ACGCGCCCGG ACGTGATCGC CGAGATCCAC
GACCAGTACC TGGCCGCCGG CGCCGACATC ATCGAGACCA ACACCTTCGG CGCCACCTTC
GTGGCGCAGG ACGACTACCA GCTCGGCGAA CTGGCCTACG AGATGAACCT CGTGGCCGCA
CGGCTGGCGC GGCAATGCTG CGATCGCTAC AGCACGCCCG ACAAGCCGCG CTTCGTGGCC
GGCGCGCTGG GCCCGACGCC GCGCACCGCC AGCATCAGCC CCGACGTCAA CGACGCCGGT
GCGCGCAACA CCGACTTCGA CCAGCTGCAC GCCGCCTACA AGGAACAGGC GCGCGGGCTG
ATGGACGGCG GCTGCGACCT GTTCCTGGTC GAGACCATCT TCGACACGCT CAACGCCAAG
GCGGCGATCT TCGCGCTCGA CGAGCTGATG GAAGAAACCG GCGAGCGCCT GCCGGTGATC
ATCTCGGGCA CCGTGACCGA CGCGTCGGGC CGCATCCTGT CGGGCCAGAC GGTCGGCGCG
TTCTGGCACA GCGTGCGGCA TGCCAAGCCG ATCGCGATCG GCCTGAACTG CGCGCTCGGC
GCCACGCTGA TGCGCCCCTA CATCGAGGAG CTGGCCAAGA TCGCCGGCGA GACCTTCGTG
TCGTGTTACC CGAACGCCGG CCTGCCCAAC CCGATGAGCG ACACCGGTTT CGACGAGACG
CCGGAGGTGA CCGGCGCGCT GATCGAGGAG TTCGCGAAAG CCGGCTTCCT CAACATCGCC
GGCGGCTGCT GCGGCACCAC GCCCGCGCAC ATCGCCGAGA TTGCGCAACG CGTGGGCCGC
TACCAGCCGC GCTGCCGGCA CACGGCGCCG TTCAGCGATC TGCTGGCGGC CTGA
 
Protein sequence
MNTPSPQSNP SPAYTRGAQL PALLQQRILV LDGAMGTMVQ RYKLDEAAFR GERFADHPSD 
LKGNNDLLVL TRPDVIAEIH DQYLAAGADI IETNTFGATF VAQDDYQLGE LAYEMNLVAA
RLARQCCDRY STPDKPRFVA GALGPTPRTA SISPDVNDAG ARNTDFDQLH AAYKEQARGL
MDGGCDLFLV ETIFDTLNAK AAIFALDELM EETGERLPVI ISGTVTDASG RILSGQTVGA
FWHSVRHAKP IAIGLNCALG ATLMRPYIEE LAKIAGETFV SCYPNAGLPN PMSDTGFDET
PEVTGALIEE FAKAGFLNIA GGCCGTTPAH IAEIAQRVGR YQPRCRHTAP FSDLLAA