| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3260 |
|---|
| Symbol | |
|---|
| ID | 6163699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3617755 |
|---|
| End bp | 3619293 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641666034 |
|---|
| Product | FAD linked oxidase domain-containing protein |
|---|
| Protein accession | YP_001792283 |
|---|
| Protein GI | 171059934 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.440454 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCG CCCTGCCGCG TGAGGCCAGC ACCGAGTTCG CGCCCACTGA AGTGATGGGC
GCGCCCGATG CCGCCACCCG CGCTCAACGC CAGACCCAGG TCGTCGCCGC GCTGACCGCG
CTGCTGCCCG CCCACGCGCT GCTCTGGCAC GGCGAGGACA CCGTGCCCTA CGAGTGCGAC
GGCCTGACCG CCTACCGCGA GCGCCCGCTG GTGGTGGTGC TGCCCGAGAC CGAGGAACAG
GTCGCCGCCG TGCTGCGCAC CTGCCACCGC CTCGACGTGC CGGTGGTGGC GCGCGGCGCC
GGCACCGGCC TGAGCGGCGG CGCGATGCCG CACGCGCTGG GCGTGACGAT GTCGCTCGCC
AAGTTCAACC ACATCGTGCG CATCGACGCC CGCGCCCGCA CCGCGCGGGT CCAGTGCGGT
GTGCGCAACC TCGCCATCAG CGAGGCCGCG GCGCCCTACG GCCTGTATTA CGCGCCCGAC
CCGAGCAGCC AGATCGCCTG CACCATCGGC GGCAACGTGG CCGAGAACTC CGGCGGCGTG
CACTGCCTGA AGTACGGCCT GACGCTGCAC AACGTGCTGC AGGTGCGCGG CTACACGATC
GAGGGCGAGC CGGTCACCTT CGGCAGCGAG GCGCTCGACG CGCCCGGCCT CGACCTGCTC
AGCGTGGTGG TCGGCAGCGA AGGCATGCTG GCCGTCACCA CCGACGTCAC CGTCAAGCTG
GTGCCCAGGC CGCAGCTGGC GCGCTGCATC ATGGCCAGCT TCGCCACCGT GCAGGCCGCC
GGCGAGGCGG TGGCGCAGAT CATCGCCGAG GGCATCATCC CGGCCGGCCT GGAGATGATG
GACAAGCCCA TGACCGCCGC GGTCGAGGAC TTCGTGCATG CCGGCTACGA CCTCGCCGCC
GCCGCCATCC TGCTGTGCGA GAGCGATGGC ACGCCCGAGG AGGTGGCCGA GGAGATCGAG
CGCATGCGCG AGGTGCTCTC CGGCTGCGGC GCGACCCGGC TCGAGGTCAG TCGCGACGAG
GCGCAGCGGC TGCGCTTCTG GAGCGGGCGC AAGAACGCCT TTCCGGCGTC GGGCCGCATC
AGCCCCGACT ACATGTGCAT GGACAGCACC ATCCCGCGCA AGCGCCTGGC CGACATCCTG
CTGGCGATCG CCGAGATGGA GATCAAGTAC GAGCTGCGCT GCTGCAACGT CTTCCATGCC
GGCGACGGCA ACCTGCACCC GCTGATCCTG TTCGATGCCA ACGATCCCGA CCAGATGCAC
CGCTGCGAGC TGTTCGGCGC CGACATCCTC GAGACCAGCG TGCGCATGGG CGGCACCGTC
ACGGGCGAAC ACGGCGTCGG CGTCGAGAAA CTCAGCTCCA TGTGCGTGCA GTTCTCGCCC
GAGGAGCGGG CCCAGATGAT CGCGCTCAAG TACGCATTCG ACTCGCGTGG CCTGCTCAAT
CCGGGCAAGG TCATCCCCAC GCTCCACCGC TGCGCCGAGT ACGGCAAGAT GCACGTCAGC
AAGGGGCTGC TGCCCTTTGC CGAGCTGCCG CGGTTCTGA
|
|---|
| Protein sequence | MNAALPREAS TEFAPTEVMG APDAATRAQR QTQVVAALTA LLPAHALLWH GEDTVPYECD
GLTAYRERPL VVVLPETEEQ VAAVLRTCHR LDVPVVARGA GTGLSGGAMP HALGVTMSLA
KFNHIVRIDA RARTARVQCG VRNLAISEAA APYGLYYAPD PSSQIACTIG GNVAENSGGV
HCLKYGLTLH NVLQVRGYTI EGEPVTFGSE ALDAPGLDLL SVVVGSEGML AVTTDVTVKL
VPRPQLARCI MASFATVQAA GEAVAQIIAE GIIPAGLEMM DKPMTAAVED FVHAGYDLAA
AAILLCESDG TPEEVAEEIE RMREVLSGCG ATRLEVSRDE AQRLRFWSGR KNAFPASGRI
SPDYMCMDST IPRKRLADIL LAIAEMEIKY ELRCCNVFHA GDGNLHPLIL FDANDPDQMH
RCELFGADIL ETSVRMGGTV TGEHGVGVEK LSSMCVQFSP EERAQMIALK YAFDSRGLLN
PGKVIPTLHR CAEYGKMHVS KGLLPFAELP RF
|
|---|
| |