| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3246 |
|---|
| Symbol | |
|---|
| ID | 6160867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3601416 |
|---|
| End bp | 3603602 |
|---|
| Gene Length | 2187 bp |
|---|
| Protein Length | 728 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641666020 |
|---|
| Product | glycoside hydrolase clan GH-D |
|---|
| Protein accession | YP_001792269 |
|---|
| Protein GI | 171059920 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3345] Alpha-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCC GCACCCACTC CGCATCCCTG CCTGACAGCC CCGCGCAGTT CATCGCGCTG
CACGGCCGCG CCAGCAGCAT CGTCATCGAA GCCCATGCCG ACGAGGCGCC GATCTGGCGC
TACTGGGGCC CGCGCCTGCC CGATGCGGCG ACACCCGGCG CGGCCTTGCG CGACAGCCGG
CCGCTGCCGT CCTTCATGCT CGATTTCGAC CAGCCGCTGA CGGTGGCACC GACCTTCGGC
GTCGGCTGGT TCGGCCAGAG CGCGCTGCTG GCGCACCGCG ACGGGCTCGA CTTCGCGCAG
GCGTACACGC GCTGCGAGAT CGAATGGCTG GCGCCCGGCT CGGCCGTCTG TCTGCACCTG
CACGACGACG TCGCCCGCCT GCGCCTGGAC CTCACGCTCA AGCTCGACGC GGCCAGCGAC
GTGCTCACGC TGCAGAGCAC GCTGCACAAC CTGGGCGACA GCGCGATCGA CGTGCAATGG
CTCGCCTCGG GCACGCTGCC GCTGCCCGGC CACAGCCAGC AGGTGCGCTC CTACGCCGGC
CAGCACGTGC ATGAATTCCT GCTGCAGACC GATCCGCTGA CGCGCAGCCT GTGGCGCAAG
GAAAGCCGGC GCGGCCGCAC CAGCCACGAC TGCTTTCCCG GTGCGGTGGT GACCACGCCC
GGCGCCACCG ACGACGCCGG CCTGGTGTTC GGCGCGCACC TCGCGTGGTC GGGCAACCAC
CAGCAGACCA TCGAGTGGCT GCACGACGGC CAATACCAGT GGCAGATGGG CGAGTGGCTG
GCACCCGGCG AAGGCCGGCT CGCACCGGGC CAGGCGCTGC ACACGCCCGA GATCGTGGCG
AGCTGCTCGA CCGCCGGCCT GAACGGCCTG GCCGCCAACT TCCACGCCGA GCTGCGCTCG
CGCCTGAACT GGCCGGGCGG CGCGATGCGC GCGCGGCCGG TGCACCTCAA CACCTGGGAA
GGCTTCTACT TCGACGTCCA CCCCGGCCCG GTCAAGGAAC TCGCCACCGC CGCCGCGGCC
GTGGGCATCG AGCGCTTCGT GCTCGACGAC GGCTGGTTCC ACGGTCGCCA CCACGACCGC
GCCGCGCTCG GCGACTGGTG GCCCGACGAG AGCAAGTTCC CCGCCGGCCT GGGCGAGCTG
ATCGGCCACG TCAACGGCCT CGGCATGAGC TTCGGCCTGT GGGTCGAGCC CGAGATGGTC
AACCCCGACA GCGAGCTGTT CCGCGCCCAC CCGGACTGGG CGCTGCAGGT CGCCGGCCGG
CCGCTGCTGA CCGCGCGCAA CCAGTTGGTG CTCGACATCT CGCGCCCCGA GGCGGCCGAC
TACCTGTTCG ACAAGATCTC CGCGCTGCTG GCCGCGCACC CGATCGACTA CCTGAAGTGG
GACCACAACC GCGACCTCGC ACCGGCCGGC CTGGCCAACG GCGCGCCCGG TTATCGGGCC
CAGGTGCATG CGGTCTACGC GCTGATGGCG CGGCTGCGCG CGGCCCATCC GCAGGTCGAG
ATCGAGAGCT GCTCGGGCGG CGGCGGGCGC ATCGATTTCG CGGTGCTGCG CCACACCCAT
CGGGTCTGGA CCAGCGACTG CATCGATGCC CTCTCGCGGG TGGCGATCCA GCGCGGCTTT
CTGCAGTTCT TCCCGCCCGA GATCATGGGC TCGCACGTCG GCACCGCGCC CTCGCACACC
ACCGGGCGCA CGCAGAACAT GGCCTTCCGC GCCGCGGTGG CGCTGCCCGG CCACTTGGGC
GTCGAGCTCG ACGTGCGGCA CCTGAACGAG GCCGAGACCA CCGAGCTGCG CGCCTGGATC
GCGCTCTACA AGCAGCTGCG CGATCGCCTG CACACGGGCC GGGTCTGGCT GGGCGAGGTG
GCCGACGGCA TCGCCTGGCA GGCCCATGGC AACGCGGCCG CGGGCGACGT GCTGCTGCTG
GTCTACCGCA CGGCGCCGAG CTCGCACCGC TACACGCCGG TGCTGCGCCT GACCATGCTC
GACGCCGGCG CGCGCTACCG CGTGCACGAG GTGCTGCCCG ACGGCACCGT TCGCGCCACC
GGCCACCACA ACACCGCGCC GTTCTTCGAT GCCATCAACA CGCCCGAAGG CCTGACGCTC
GACGGCGCCT GGCTCGCCCA CGCCGGCCTG CCGCTGCCGC GTGCGCAGGC CGAGACCGCG
TTCATCGTGC GGCTGCAGAA GGTCTGA
|
|---|
| Protein sequence | MNTRTHSASL PDSPAQFIAL HGRASSIVIE AHADEAPIWR YWGPRLPDAA TPGAALRDSR
PLPSFMLDFD QPLTVAPTFG VGWFGQSALL AHRDGLDFAQ AYTRCEIEWL APGSAVCLHL
HDDVARLRLD LTLKLDAASD VLTLQSTLHN LGDSAIDVQW LASGTLPLPG HSQQVRSYAG
QHVHEFLLQT DPLTRSLWRK ESRRGRTSHD CFPGAVVTTP GATDDAGLVF GAHLAWSGNH
QQTIEWLHDG QYQWQMGEWL APGEGRLAPG QALHTPEIVA SCSTAGLNGL AANFHAELRS
RLNWPGGAMR ARPVHLNTWE GFYFDVHPGP VKELATAAAA VGIERFVLDD GWFHGRHHDR
AALGDWWPDE SKFPAGLGEL IGHVNGLGMS FGLWVEPEMV NPDSELFRAH PDWALQVAGR
PLLTARNQLV LDISRPEAAD YLFDKISALL AAHPIDYLKW DHNRDLAPAG LANGAPGYRA
QVHAVYALMA RLRAAHPQVE IESCSGGGGR IDFAVLRHTH RVWTSDCIDA LSRVAIQRGF
LQFFPPEIMG SHVGTAPSHT TGRTQNMAFR AAVALPGHLG VELDVRHLNE AETTELRAWI
ALYKQLRDRL HTGRVWLGEV ADGIAWQAHG NAAAGDVLLL VYRTAPSSHR YTPVLRLTML
DAGARYRVHE VLPDGTVRAT GHHNTAPFFD AINTPEGLTL DGAWLAHAGL PLPRAQAETA
FIVRLQKV
|
|---|
| |