| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3231 |
|---|
| Symbol | |
|---|
| ID | 6162746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3585109 |
|---|
| End bp | 3586329 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641666005 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001792254 |
|---|
| Protein GI | 171059905 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAC ACACACGTGC CTGGTTTGCG GCGCTGCTGC TGGGGGTGGC TGCGGGCTAC
GCGCCAGCCC AGACCCCGGC CCCGGCGCAG GAGTCCGTGC GCGCCGAGAT CGGCAAGTCG
CTGCAGGGCG CGCAGGAGCT GATGAAGGCC GGCAAGTTCC GCGAGGCGCT CGCCAAGGTG
CGTGAGGCCG ATGCGGCGCC CAACCCGACC GCTTACGAAC GGTTCATCCT CGATCGCATG
CGTGGCAGCG CGGCCGCCGG CGCCGGTGAC GAGGTCGTCG CGAGCCGTTC TTTCGAGGCC
GCGCTCGCCA GCGGCCGGCT GCAGCCGGCC GAGGCGCTGG CCATCCTCGA AGCCCTGGCG
TCGTCGGCCT ACCGGACCAA GGACTACGCC AAGGCGATCG AGGTGGCGCA GCGCTACTTC
AAGGAGGGCG GGAAAAGCGA GCCGATGCGC AACCTGATGA CCAGCGCGCA CTACCTCAGC
GGCGACCATG CCGGCGTGAT CCGCGACATG CAGCAGCGTG TGCAGGCGGT CGAACAATCG
GTCCCGGTGG TCGACGAGAC GACGCTGCGC ATGCTGGCGG CCAGCTACGC CAAGCTCGGC
GACGATGCCG GTTATGCCAA CACGCTCGAG AAGCTGCTGG TGCACCACCC CAAGAAGGAC
TACTGGGAAG ACCGCCTGAC GCGGTTGCAG AACAGCGCTG CCTTCAGCGA CCGCCTGATG
CTCGATCTCT ACCGCCTGCG GCTGGCGACC GGCACGCTCG ATAGCACCGA GCAGTATTTC
GAGATGGCGC AGCTGGCGCT GCAGGCTGCA TTGCCTTTCG AGGCCAAGCG GGTCGTCGAC
CTGGGTTACG CGGCCGGCAA GTTCGGCAGC GGTGCCGAGG CCGAGCGCCA CAAGCGACTG
CGCGAACTCG TCAACCGGCA GGCCGCCGAG GACGAGAAGG CGCTGCGTGT CGAGGTGGTC
GGCCGCACCG GGGAGGCCCT GGTCAACATG GGCCAGGCGC TGGTCAGCGC GGGCCGTTAC
GACAAGGGCA TCGAGCTACT CGAGCACGGT GTCGCCAAGG GCGGTCTGAA GCGGCCGGAG
GACGCCCGTC TGCACCTGGC CGTGGCTTAT TTCCAAGGCG GCAGCAAGCC CAAGGCCGTC
GAGACCTTCA AGGCCGTTCG CGGCGGCGAG GGTGTCGCTG ACCTGGCGCG GCTGTGGGGC
ATCCACGCCA GCCGCAACTG A
|
|---|
| Protein sequence | MKTHTRAWFA ALLLGVAAGY APAQTPAPAQ ESVRAEIGKS LQGAQELMKA GKFREALAKV
READAAPNPT AYERFILDRM RGSAAAGAGD EVVASRSFEA ALASGRLQPA EALAILEALA
SSAYRTKDYA KAIEVAQRYF KEGGKSEPMR NLMTSAHYLS GDHAGVIRDM QQRVQAVEQS
VPVVDETTLR MLAASYAKLG DDAGYANTLE KLLVHHPKKD YWEDRLTRLQ NSAAFSDRLM
LDLYRLRLAT GTLDSTEQYF EMAQLALQAA LPFEAKRVVD LGYAAGKFGS GAEAERHKRL
RELVNRQAAE DEKALRVEVV GRTGEALVNM GQALVSAGRY DKGIELLEHG VAKGGLKRPE
DARLHLAVAY FQGGSKPKAV ETFKAVRGGE GVADLARLWG IHASRN
|
|---|
| |