| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3225 |
|---|
| Symbol | |
|---|
| ID | 6161983 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3576250 |
|---|
| End bp | 3577374 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641665999 |
|---|
| Product | carboxylate-amine ligase |
|---|
| Protein accession | YP_001792248 |
|---|
| Protein GI | 171059899 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2170] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR02050] uncharacterized enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGG GTGAATTCGC ACAGTCGCGC TCGCTCACGC TGGGCGTCGA GCTAGAACTG
CAGATCGTCA ACACGCACGA CTACGACCTG GCGCCGTCGG CGGTCGACCT GCTGCGCCTG
ATGGAGCGAC ACAAGGTGCC CGGCAGCGTG GTGCCGGAGA TGACCGACAG CATGATCGAG
CTGTCCACCG GCATCTGCAC CGACTACGAC GACGCGCTGT CGCAGCTGCG CGAGATCCGC
GACGCGCTGG TGTCGTGCGC GGCCCAGCTC AACGTCGGCC TGTGCGGCGG CGGCACCCAT
CCGTTCCAGG ACTGGAGCCA GCGCCGCATC TTCAACAAGC CGCGTTTCCA GGAGCTGTCG
CAGCTCTACG GCTACCTGTC CAAGCAGTTC ACGATCTTCG GCCAGCACGT GCACGTCGGC
TGCCCGGGGC CGGACCAGGC GCTGGTGCTG CTGCACGGGC TGTCGCGCTT CATCCCGCAC
CTGATCGCGC TGAGTGCCTC GTCGCCGTTC GTGCAGGGCA CCGACACCGG CTTCGATTCG
GCACGGCTGA ACTCGGTGTT CGCCTTCCCG ATGTCGGGCC GCGCGCCCTT CGTGCAGACC
TGGGACGACT TCAACGTCTA CTTCAACAAG ATGACCCGCA CCGGCGTCAT CAAGAGCATG
AAGGACTTCT ACTGGGACAT CCGCCCCAAG CCCGAGTACG GCACGATCGA GGTGCGCGTG
CTCGACACGC CGCTGACGGT CGAGAAGGCC GCCGCGATGG CCGGCTACAT CCAGTGCCTG
GCGCGCTGGC TGCGGGTGGA GAAGCCCTTC GAGCTCAACG AGGACGACTA CCTGCCCTAC
ACCTACAACC GCTTCCAGGC CTGCCGCTTC GGGCTCGACG GCATCTTCGT CGACCCGCAG
ACCGGCGAAC ACCGCACGCT GCGCGACGAC ATCCTGGCCA GCTTCGACAA GCTCGAACTG
CACGCGATGG AGCTGCGCGC CGAGGGCGCC ATCAACTACC TGCGCGCCGA CCTGCTGCGC
ATCGGCAACG ACGCCAGCTG GATCCGCCAC ATCAACGACG AAGAGCACCT GCTGGCCGAA
GTGGTGCGTC AACAATGCCA ACGCTGGGCC GGGCAGGGGC GCTGA
|
|---|
| Protein sequence | MSLGEFAQSR SLTLGVELEL QIVNTHDYDL APSAVDLLRL MERHKVPGSV VPEMTDSMIE
LSTGICTDYD DALSQLREIR DALVSCAAQL NVGLCGGGTH PFQDWSQRRI FNKPRFQELS
QLYGYLSKQF TIFGQHVHVG CPGPDQALVL LHGLSRFIPH LIALSASSPF VQGTDTGFDS
ARLNSVFAFP MSGRAPFVQT WDDFNVYFNK MTRTGVIKSM KDFYWDIRPK PEYGTIEVRV
LDTPLTVEKA AAMAGYIQCL ARWLRVEKPF ELNEDDYLPY TYNRFQACRF GLDGIFVDPQ
TGEHRTLRDD ILASFDKLEL HAMELRAEGA INYLRADLLR IGNDASWIRH INDEEHLLAE
VVRQQCQRWA GQGR
|
|---|
| |