| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3221 |
|---|
| Symbol | glpD |
|---|
| ID | 6161463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3570780 |
|---|
| End bp | 3572375 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641665995 |
|---|
| Product | glycerol-3-phosphate dehydrogenase |
|---|
| Protein accession | YP_001792244 |
|---|
| Protein GI | 171059895 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAACCACC CGCAAACCCC ATCGTCGTCG AGCCCCGCTG GCGGTGCCTG CGACGTGCTC
GTCGTGGGGG GCGGCATCAA CGGCGCCGGC ATCGCCCGCG ACCTGGCCGG TCGCGGCCTG
TCGGTGCTGC TGGCCGAGCA GGACGACTTG GCCTCGCACA CCTCGTCGGC CTCGACCAAG
CTGATCCACG GCGGCCTGCG CTACCTCGAA TACCACGAGT TTTCGCTGGT TCGCAAGGCG
CTGGCCGAGC GCGAGGCGCT GCTGCGCAGT GCGCCGCACA TCATGCGGCC GCTGCGTTTC
GTGATGCCGC ACGACCCGGC GATGCGGCCG GCCTGGATGA TCCGCGCCGG GCTGTTCCTG
TACGACCACC TGGCCCGCCG CGAGATCCTG CCGGCCTCGC GGGCGGTCGA CCTGCGCCGC
CATGCCGCCG GCGTGCCGCT CAAGCCCGAG TTCCGCCGCG GCTTCGTCTA TTCGGACGGC
TGGGTCGACG ACGCGCGGCT GGTGGTGCTG GCGGCGATCG ACGCCGCCGA ACGCGGCGCG
CGCATCGCCA CGCGCTGCCG GGTGGTGCGG GTGGCACGTG TCGGCGCACG TTGGTCGGCC
ACGCTGCAGC ACCGCGACGG CCGCGAGGAG ACGGTGACGG CGCGAGCGCT CGTCAACGCC
GCCGGGCCGT GGGCCAGCCA GTTCCTGCGC GAGCATGCGC ACCTGCCCGA GGCGCGATCG
CTGCGCCTGG TCAAGGGCAG CCACATCGTC GTGCCGCGCC TCTTCGAGCA CGATCACGCC
TACATCTTCC AGAACCCCGA CCGGCGCATC ATCTTCGCGA TCCCCTACGA ACGCGACTAC
ACGCTGATCG GCACCACCGA CGTCGAACAC CACGGCCCGA TCGGCGAGGT GCGCATCGAC
GCCGACGAGA TCGGCTACCT GTGCGCGCAG GCCAGCCGCT ACTTCGCCCA GCCGGTGCAG
CCGCAGGACG TGGTGTGGAC CTACTCCGGC GTGCGGCCCC TGCTGGGCAA CGAGGGCGAG
GACGACGCGG CGGCGGTGAC ACGCGACTAC GAGCTCGAGC TGCGCGACGA CGGCGCGCCG
CTGCTGTCGG TCTGGGGCGG CAAGATCACG ACCTTCCGCA AGCTCGCCGA GGAGGCGGCC
GACCGGCTGT GCGGCGTGCT CGGCGTGCCG GGCGTGTCTG GCCAGCAAGG GGCGGCCTGG
ACCGTCGATG CGCCGCTGCC CGGCGGCGAC CTGCGCGAGT GGATCGGCGC GCCGCAGCGC
CCGGACGTCG ACCTGCAGCG CTTCGAGCAG GCGCTCGCCC GCCGCCATCC GCAGCTGCCG
GAGGCCCTGC GTGGCCGCTG GGCGCGCGCC TACGGCTCGC GCGTCGACCT GCTGCTCGAA
GCCGGCACGT TGGGCGCCGA AGTCGCGCCG GGCCTGCACG AGGCCGAGCT GGACTACCTG
CACCGCCACG AATGGGCCCG CAGCGCCGAC GACGTGCTGT GGCGGCGCAG CAAGCTGGGC
CTGCACATGG ACGAGGCCGC GCGCGAGCAG GTCGCGCGCT GGTGTGAGAC CCGATGGCAG
GGGGCAGAAA ACGGACTAGA ACAGGCAGCG CGCTGA
|
|---|
| Protein sequence | MNHPQTPSSS SPAGGACDVL VVGGGINGAG IARDLAGRGL SVLLAEQDDL ASHTSSASTK
LIHGGLRYLE YHEFSLVRKA LAEREALLRS APHIMRPLRF VMPHDPAMRP AWMIRAGLFL
YDHLARREIL PASRAVDLRR HAAGVPLKPE FRRGFVYSDG WVDDARLVVL AAIDAAERGA
RIATRCRVVR VARVGARWSA TLQHRDGREE TVTARALVNA AGPWASQFLR EHAHLPEARS
LRLVKGSHIV VPRLFEHDHA YIFQNPDRRI IFAIPYERDY TLIGTTDVEH HGPIGEVRID
ADEIGYLCAQ ASRYFAQPVQ PQDVVWTYSG VRPLLGNEGE DDAAAVTRDY ELELRDDGAP
LLSVWGGKIT TFRKLAEEAA DRLCGVLGVP GVSGQQGAAW TVDAPLPGGD LREWIGAPQR
PDVDLQRFEQ ALARRHPQLP EALRGRWARA YGSRVDLLLE AGTLGAEVAP GLHEAELDYL
HRHEWARSAD DVLWRRSKLG LHMDEAAREQ VARWCETRWQ GAENGLEQAA R
|
|---|
| |