Gene Lcho_3220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3220 
Symbol 
ID6161462 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3569643 
End bp3570617 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content65% 
IMG OID641665994 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_001792243 
Protein GI171059894 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTTGA AGCCCCTTTC CACCGCCCTG CTGCTGGCCA GTCTGTGCGT TTCCGGCAGC 
GCCTGGGCGC AGCAGCAGTC GATGCGTCTG GCCCACGGCC TGAACGACAA GCACCCGGTG 
CACCTCGCGA TGGTGCGGTT CGCCGAACTC GCCAAGCAGA AGTCCAACGG CGAGATCGAC 
ATCAAGGTGT TCCCCAACGG CACCCTGGGC GGCGAGCGCG AGACGCTCGA GCAGGTGCAG 
AACGGCGTGC TCGAACTGAC CAAGGCCAGC GCCTCGCCGC TCGAGACCTT CGCGCCCGAG 
TACAAGGTCT TCAACCTGCC GTTCGTGTTT CGCAGCAAGG AGCATTTCTT CAAGGTGCTC 
GACGGCCAGG TCGGCGAGTC GATCCTGGCC GCTTCCAAGA GCCGCGGCTT CATCGGCCTG 
ACCTTCTACG ACTCGGGCTC GCGCAGCTTC TACGCCAAGA AGCCGATCAA CACGCCCGAT 
GACCTGAAGG GCCTGAAGAT CCGCGTCCAG CAGAGCCCGA CCACCATCAA GATGGTCCAG 
GCGCTGGGTG CCGCACCCAC GCCGATGGCC TGGGGCGAGG TCTACCCGGC GCTGCAGTCG 
GGTGTGGTCG ACGGCGCCGA GAACAACATC ACCGCGCTGA CCACCGGCCG CCATGGCGAG 
GTGAGCAAGT TCTACTCGAT GACCGAGCAC CAGATGGTGC CCGACGTGCT GGTGATCTCG 
TCGGCCAAGT GGGACTCCCT GAAGAAGCCG CAGCAGGATG CGCTGCGCCA GGCCGCGCAC 
GAGTCCTTCG TCTACCAGCG CGGCCTGTGG GCCGAGGCCG AGAAGACCGA GGCGGTCGCG 
GCCGAGAAGC TGGGCGTGAA GATCAGCATG CCCAACAAGC AGGCGTTCAT CGACAAGGTC 
AAGCCGATGC TGGACGAGGA GCGCAAGAAC GCCCGCGTGT CCGGTCTGCT CGACCAGATC 
AACGCGGTTC GCTGA
 
Protein sequence
MKLKPLSTAL LLASLCVSGS AWAQQQSMRL AHGLNDKHPV HLAMVRFAEL AKQKSNGEID 
IKVFPNGTLG GERETLEQVQ NGVLELTKAS ASPLETFAPE YKVFNLPFVF RSKEHFFKVL 
DGQVGESILA ASKSRGFIGL TFYDSGSRSF YAKKPINTPD DLKGLKIRVQ QSPTTIKMVQ 
ALGAAPTPMA WGEVYPALQS GVVDGAENNI TALTTGRHGE VSKFYSMTEH QMVPDVLVIS 
SAKWDSLKKP QQDALRQAAH ESFVYQRGLW AEAEKTEAVA AEKLGVKISM PNKQAFIDKV 
KPMLDEERKN ARVSGLLDQI NAVR