Gene Lcho_3219 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3219 
Symbol 
ID6161461 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3569094 
End bp3569624 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content67% 
IMG OID641665993 
Producttripartite ATP-independent periplasmic transporter DctQ 
Protein accessionYP_001792242 
Protein GI171059893 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCAAA TGATGCGATC CGTGATCGAC CGCCTGCTCC AGGCCGCGCT GATCCTGTGT 
TTTTCCGTGC TGTCCGTGTG CGTGATCTGG CAGGTGATCA GCCGCTACGT GCTCGGCAGC 
CCGTCGACCT TCACCGAGGA GACCTCGCGT TTCGCGGTGA TCTGGCTCAG CCTGCTCGGC 
ACGGCCTACG CCTGCGGCCG GCTCGAGCAC ATGGGCTACG ACATGCTGGC CCAGAAGCTC 
AGCGGCCCGG CGCTGCTGCG CCACATGCGG GCGGTGGCGG CGCTGGTGCT GGCCTTCGCG 
GCGGCGGTGT TCGTCTACGG CGGGCTGCGG CTGGTGCTGC GCGCCTTCGA GGTCGAGCAG 
CTCTCGGCCA CGCTCGAGGT GCCGATGGGC TACGTCTACA GCTGCATCCC GATCGCCGGG 
GTGTGCATCG TCTTCTACGA GATCGCGATC CTCGTGGCGC CCGGCAGCTT CCGGCACGCC 
GACGAGGTCG AGGAAGCGAT CGAACACGTC AACCAGGAGT TGCCGGCATG A
 
Protein sequence
MLQMMRSVID RLLQAALILC FSVLSVCVIW QVISRYVLGS PSTFTEETSR FAVIWLSLLG 
TAYACGRLEH MGYDMLAQKL SGPALLRHMR AVAALVLAFA AAVFVYGGLR LVLRAFEVEQ 
LSATLEVPMG YVYSCIPIAG VCIVFYEIAI LVAPGSFRHA DEVEEAIEHV NQELPA