| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3218 |
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| Symbol | |
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| ID | 6161460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3567793 |
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| End bp | 3569097 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641665992 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001792241 |
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| Protein GI | 171059892 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCAC TGCTCATCCT CGGCGTGGTG TTCACGCTGC TGCTGCTGTT CGGGGTGCCG
GTCAGCTTCT GCATCGGCAT CGCGACCGTG CTGGCGCTGT TCACCGTGAC GCCCAGCATC
GACACCGCGC TGATCGTCTC GGCCCAGCGC GTGGCGTCGA GCCTGGACAG CTTCACCCTG
GTGGCGATCC CGCTGTTCAT CCTGGCGGGT GGCCTGATGA ACACCGGCGG CATCGCCCTG
CGCCTGATCG ACCTGGCCAA GGTGCTGGTC GGCTGGCTGC CGGGCTCGCT GGCGCAGATC
TCGGTGGTGG CCAACGCGCT GTTCGGCGCG ATCTCGGGCT CGGCGGTGGC CAGCGCCGCC
AGCGTGGGCG CGACGCTGTC GCCGCTGCAG CGCAAGGCCG GCTACGACAT GCCGATCTGC
GCCGCCGCCA ACGTGGCGGC CTCGCCGTGC GGACTGCTGA TCCCGCCGTC GGGCGCGCTG
ATCGTCTACT CGCTGATCTC GGGCGGCACG CCGGTCGACG TGCTGTTCGT CGCCGGCTAC
ATCCCGGGCA TCCTGATGGC GCTGTCGGTG ATGATCTGGC TGCACATCGT GGCCAGCCGC
GGCGATCTGC CGCGCGACAC CCAGCGCTAC ACCCTGCGCG AAGCGCTGGT GGTGTTCTGG
CGTGCGCTGC CGGCGCTGGC GATGGTGCTG ATCATCATGG GCGGCATCGT CGCCGGCGTG
TTCACCGCGA CCGAGGCTGC CGGCGCGGCC GCGCTCTACA CGCTGGTCCT GAGCCTGCTC
TACCGCAACC TGACGTGGAA GAAGCTGGCC GATGCGATGC TCGGTGCGGC CGTCGGCACC
GCGGTGGTGA TGCTGATGGT GGGCGTGTCG ATGACGATGT CGTGGCTGCT CGCCAGCACC
GGCTCGGTGA CGATGCTGGC CGACGCGATC ACCGGCTTCT CCAGCAACCC GATCGTGCTG
CTGCTGCTGT TCAACGTGCT GCTGCTGCTG CTGGGCACCT TCCTGGACAT CACGCCCGGC
CTGCTGATCC TCACGCCGAT CTTCCTGCCG GTGGCGATGA AGCTGGGCAT CTCGCCGGTG
CACTTCGGAA TCATCATCAC CTTCAACCTG TGCATCGGCA TCGCCACCCC GCCGGTGGGC
AGCACGCTGT TCGTGGCCGC CCGCGTCGCC AACGTGTCGC TGGCCCAGCT CACCCGGCCG
TTGCTGCCGA TGTTCGCTTT CATGATCGTG GCGCTGTTCC TGGTCACCTA CATCCCGGCA
CTGTCCCTGT GGCTGCCCCA GGTGCTGCTC GGCAAGACCG GTTGA
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| Protein sequence | MTALLILGVV FTLLLLFGVP VSFCIGIATV LALFTVTPSI DTALIVSAQR VASSLDSFTL
VAIPLFILAG GLMNTGGIAL RLIDLAKVLV GWLPGSLAQI SVVANALFGA ISGSAVASAA
SVGATLSPLQ RKAGYDMPIC AAANVAASPC GLLIPPSGAL IVYSLISGGT PVDVLFVAGY
IPGILMALSV MIWLHIVASR GDLPRDTQRY TLREALVVFW RALPALAMVL IIMGGIVAGV
FTATEAAGAA ALYTLVLSLL YRNLTWKKLA DAMLGAAVGT AVVMLMVGVS MTMSWLLAST
GSVTMLADAI TGFSSNPIVL LLLFNVLLLL LGTFLDITPG LLILTPIFLP VAMKLGISPV
HFGIIITFNL CIGIATPPVG STLFVAARVA NVSLAQLTRP LLPMFAFMIV ALFLVTYIPA
LSLWLPQVLL GKTG
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