Gene Lcho_3215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3215 
Symbol 
ID6161457 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3561606 
End bp3563336 
Gene Length1731 bp 
Protein Length576 aa 
Translation table11 
GC content70% 
IMG OID641665989 
Producthypothetical protein 
Protein accessionYP_001792238 
Protein GI171059889 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAATTC CTGCTTTCCC CCTTGCCCGC ACGGTGCTCG CGAGCGCACT TCTGTCGGCC 
GGTCTGCTCG GCACCGCCTG CGGCGGCGGC GATCCGGTGG CCGTGCCCGA GGCCACGCCC
ACCTCGCTGA GCCTGGCCAG GATCGGCGGC TATGCCGATG CCAGCCTGAC GAACCCGGTC
GGCGCGGCGG AGATCACCGC GTTCGACGCC GCCAGCAAGC GCCTGTTCGT CGTCAACAGC
GTGCTGGCCA CGGTCGACGT GCTCGACCTG GCCAACCCGG CCGCACCGGT CAAGCTCGCC
AGCATCGACA TCAGCGCGTT GGGTGCGTCG GTCAACAGCG TGGCGGTCAG CAACGGGTTG
GTGGCACTGG CGATCGAAGC CAATCCCAAG ACCGCACCCG GCGTGGTGGC GTTCTACAAC
GCCAGCAACC TCGCGCTGCT GGGCCAGGTC ACGGTGGGCG CCTTGCCCGA CATGCTGACC
TTCACCCCCG ACGGCCAGAC CGTGGTGGTG GCCAACGAGG GCGAGCCCGC CAACTACGCC
GTGGCCGCCA CCGCGACCAC ACCCGCCATC GCGGCCGACG ACCCCGAAGG CTCGATCAGC
GTCATCAGCG TGACGCGCAC CGGCAGCGCG AGCACGCTGG CCGTCACGCT GAGTGCCCGC
ACGGCCGACT TCAGCGCCTA CAACAGCCAG CTCGCCGAAC TGCGCGCGCT GGGCGTGCGC
ATCTACGGGC CCGGTGCCAC GGTGGCGCAG GACCTCGAAC CCGAGTACGT CACGATCTCG
GCCGATGGCC GCACCGCCTA CGTGACGCTG CAGGAGAACA ACGCGATCGC CACGGTGGAC
ATCGCCAGCG CCACCGTCAC CGCGATCCGC CCGCTCGGCA CCAAGGATCA CGGCGTGGCC
GGTTTCGGTC TCGACCCGAG CGATGAAGAC GGCGGCACCA ACACCAATTC GGGCACGCCG
GCCGTCCAGA TCGGCACCTG GCCGGTGCGC GGCATGTACC TGCCCGACGC CATCGCCAGC
TACAGCGTGG GCGGCCAGAC CTACCTGATC ACCGCCAACG AGGGCGATGC CCGCGCCGAC
TGGCCGGGCC TGAACGAGGA GGTGCGCATT CGCGCCCATT GCAGCGCCGG CCTCGACCCG
GCGGTGTTTG CCGGCGCCAC CGGCCTGGCA GCCGATCCGC TGCTCAACGA CTCCAACCTC
GGCCGCCTGC GTGTCACCAG CCTGCCCAAC GGCAACGACA CCGGCAAGAA CGCCGCCGGC
CAGTGCAACA AGCTGCATGC CTTCGGCGCG CGCTCGTTCT CGATCTGGGC CACCGGCGGT
ACCGGCGCCA TGACCCGTGT CTACGACTCG GGCGACGAGT TCGAGCAGCG CACCGTGGCG
CTGCCGAACG TGCTCTTCAA TGCCAGCCAC GATGCCAATA CGCTCGACGG CCGCAGCGCC
TCCAAGGGCC CCGAGCCCGA GTCGGTGACC ACGGCCAAGT TCGGCAACAA GACCTATGCC
TTCATCGGGC TGGAGCGGGT GGGCGGGCTG ATGGTCTATG ACGTCACCAC GCCGACGGCA
CCGAGCTACG TCACCTACCT CAACAGCCGC GACGCCACCA CCGGCGACCG CGGCCCCGAG
GGCCTGGTGT TCGTGCCGGC GGCGCAGTCT CCCAACGGCA AGCCGCTGCT GATCGTGGGC
AACGAGGTCA GTGGCAGCAC CGCGGTGCTG CAGGTCAACC TGGCGTATTG A
 
Protein sequence
MRIPAFPLAR TVLASALLSA GLLGTACGGG DPVAVPEATP TSLSLARIGG YADASLTNPV 
GAAEITAFDA ASKRLFVVNS VLATVDVLDL ANPAAPVKLA SIDISALGAS VNSVAVSNGL
VALAIEANPK TAPGVVAFYN ASNLALLGQV TVGALPDMLT FTPDGQTVVV ANEGEPANYA
VAATATTPAI AADDPEGSIS VISVTRTGSA STLAVTLSAR TADFSAYNSQ LAELRALGVR
IYGPGATVAQ DLEPEYVTIS ADGRTAYVTL QENNAIATVD IASATVTAIR PLGTKDHGVA
GFGLDPSDED GGTNTNSGTP AVQIGTWPVR GMYLPDAIAS YSVGGQTYLI TANEGDARAD
WPGLNEEVRI RAHCSAGLDP AVFAGATGLA ADPLLNDSNL GRLRVTSLPN GNDTGKNAAG
QCNKLHAFGA RSFSIWATGG TGAMTRVYDS GDEFEQRTVA LPNVLFNASH DANTLDGRSA
SKGPEPESVT TAKFGNKTYA FIGLERVGGL MVYDVTTPTA PSYVTYLNSR DATTGDRGPE
GLVFVPAAQS PNGKPLLIVG NEVSGSTAVL QVNLAY