Gene Lcho_3214 details

Gene Information

• Locus tag: Lcho_3214
• ID: 6161615
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3559490
• End bp: 3561496
• Gene Length: 2007 bp
• Protein Length: 668 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 641665988
• Product: 5'-nucleotidase domain-containing protein
• Protein accession: YP_001792237
• Protein GI: 171059888
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 53
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGCGTGA AAACGATTCA AGTGGCTGTG GTGCTGGCGT TGAGCTCATT GCTGCTCACC 
GCCTGCGGCG GCAGTGGCGA TGACGCCGCT GCATTGCCTG CCACCGCCTA CGAGATGCAA 
CTGCTGCACG TGTCCGACAT GGACAGCGGC GGCGATCTGG TCACCAACTC GAAGGGCCTG 
TCGGCGCTGG TGCAGAAGTT CCGCAGCGAG ATGCCCGATC ACACGGTCTT CCTGTCATCG 
GGTGACAACT ACATCCCCGG CCCGTTCTTC AATGCCGCCG ACGATGCCAG CCTGAGCGCA 
GAACTGGGCG CGCCGTCGGC CGGCCGGGCC GACATCGCCA TCCTCAACGC GATGGGCCTG 
CAGGCTTCGG CCTTCGGCAA CCACGAGTTC GATCTCGGCA CGCGCACCGT CAGCGACCTG 
ATCCGCACCA CCGGCACCTG GGTGGGCGCA CAGTTTCCCT ACCTGTCGGC GAACCTGAAC 
TTCAGCGCCG ACGGCAACCT GGCGGCGGTG GCAGCGGCGG CCAACGACGG CGTCACGGCC 
GGCGCATTGC GCGGCAAGAT CGCCAAGTAC ACCGTCGTCT CGGTGGGTGG CCAGACCATC 
GGCGTGGTCG GCGCCACCAC GCCGACGCTG CCCAGCATCA CCACGGTGGG CGGCATCACC 
GTCGCACCCA CGGGCGCTTC GGCCGCCGAC ATCGACGCGC TGGTGGCCCA GATCCAGCCC 
TCGGTCGACG CCCTGGTGGC GCGTGGCATC GACAAGATCG TGCTGCTGGC CCACATGCAG 
CAGCTCACGA TCGAAGAACA GCTCGCCCCC AAGCTGCGCG ATGTCGACGT GATCGTGGCC 
GGCGGCTCCA ACACCGGTCT GTACGACAGC ACCGACTACG TGCGCCCCGG CGACACCAAT 
CGCGGCACCT ACCCGAAGAC CTTCACCTCG GCCAAGAGCG AGCCGGTGCT GCTGGTCAAC 
GTCGACGCCG ACTACAAATA CCTCGGCCGG CTGGTGCTGC CGTTCGACGC CCAGGGCCGC 
GTCATCACCG GCAAGCTCGA CGCCGCCAGG AACGGCGCCT GGGCCAGCGA CACCGAAGGC 
CTGCGCCGCG CCGGCCTGAG CGCCGCCGAC GCCATGCCCG CGGTGGCCGC CATCGCCGAC 
AAGATCCAGG CCGTGATCAG CAGCAAGGAC GGCAACCTGT TCGGCGCCGC CTCGGTCTAC 
CTCGAGGGCG ATCGCGTGCT GGTGCGCAAC CAGGAAACCA ACCTCGGCAA TCTCACCGCC 
GAGGCCAACC TGGCACTGGC CCGTGCCACC GACGCCAGCA CCACGCTGTC GTTCAAGAAC 
GGTGGCGGCG TCCGCTCGTC GATCGGCACC ATCAATGCAC CGCCGGGTTC GACCAGCGGC 
GGCTTCAAGG ACAAGACCGC GGCCAACACC TCGGCGGGCA AGCAGGCGGG CGACATCTCG 
CAGCTCGACA TCGAGTTCTC GCTGCGCTTC AACAATGGCC TGTCGCTGCT GACGATCGAC 
GCCCAGCAAC TCAAGGACGT GCTCGAACAC GGCGTGGCCG ACTGGACCGC GACGTCCACC 
TCGGGGCGCT TCCCGCAGGT GGCCGGACTG CGCTTCAGCT TCGACCCGAC CGGCGCGGCG 
CTGTCGCGCA TCCGCACAAT CGTCGTCGAT GACCCCGACG GCGCCGGCCC GCTGACCGAG 
CAGGTGGTGT ATTCCGGTGG CGCGTTCAAG GTGCCGGTCA CCCGCACCTG GCGCATCGTC 
ACGCTCGACT TCCTGGCCGG CGGCGGCGAC AGCTACCCGT TCCCGGCCTT CGTGACGGCC 
AACGCGGCGC AGGTCAACCG CATCGACCTC GTGCCCACCG GCGTCACCAA GACCTTCACC 
ACGGCCGGCA CCGAACAGAA GGCACTGGCC GATCACCTGG CCGCCGCGTT CCCGCGCACG 
GCGCCCTACG GCAACGCCGA CGGTGGCGCC GCAACCGATC AGCGCATCGT CAACCTCTCG 
GTTCGCACCG AAATCCTGCC GCAGTAA 

 

Protein sequence

MRVKTIQVAV VLALSSLLLT ACGGSGDDAA ALPATAYEMQ LLHVSDMDSG GDLVTNSKGL 
SALVQKFRSE MPDHTVFLSS GDNYIPGPFF NAADDASLSA ELGAPSAGRA DIAILNAMGL 
QASAFGNHEF DLGTRTVSDL IRTTGTWVGA QFPYLSANLN FSADGNLAAV AAAANDGVTA 
GALRGKIAKY TVVSVGGQTI GVVGATTPTL PSITTVGGIT VAPTGASAAD IDALVAQIQP 
SVDALVARGI DKIVLLAHMQ QLTIEEQLAP KLRDVDVIVA GGSNTGLYDS TDYVRPGDTN 
RGTYPKTFTS AKSEPVLLVN VDADYKYLGR LVLPFDAQGR VITGKLDAAR NGAWASDTEG 
LRRAGLSAAD AMPAVAAIAD KIQAVISSKD GNLFGAASVY LEGDRVLVRN QETNLGNLTA 
EANLALARAT DASTTLSFKN GGGVRSSIGT INAPPGSTSG GFKDKTAANT SAGKQAGDIS 
QLDIEFSLRF NNGLSLLTID AQQLKDVLEH GVADWTATST SGRFPQVAGL RFSFDPTGAA 
LSRIRTIVVD DPDGAGPLTE QVVYSGGAFK VPVTRTWRIV TLDFLAGGGD SYPFPAFVTA 
NAAQVNRIDL VPTGVTKTFT TAGTEQKALA DHLAAAFPRT APYGNADGGA ATDQRIVNLS 
VRTEILPQ