Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3211 |
Symbol | |
ID | 6161612 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3555088 |
End bp | 3555879 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641665985 |
Product | extracellular solute-binding protein |
Protein accession | YP_001792234 |
Protein GI | 171059885 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACGCC GCCCCCTCGT GATGTCCGTC GTGCTGGGCC TGAGCGCCCT GCTGTCGCCA CTGGCCGTGC AGGCCCAGGC CGCACTCGAC ACGGTGATGT CGCGCAAGCT CATCAACATC GCCGTGCCGA CCGACTTCCC GCCCTACGGC TTTGTCGGCA TCGACCTCAA GCCGCAGGGC CTCGACGTCG ACATGGCCAA CCTGATCGCC GCCAAGCTGG GCGTCAAGAT CGAGCTGATC CCCGTCACCA GCGCCAACCG CATCCCCTAC CTGCAGACGA AGAAGGCCGA TCTGGTGATC TCGACGCTGG GCAAGAACGC CGAGCGCGAG AAGGTGATCG ACTTCACCGC CGCCTACTCG CCGTTCTTCC AGGCCGTGTT CGCCGCCAAG GGCGTGGCGA TCAAGAGCCC GGCCGACCTG GCCGGCAAGA CCGTGGCCGT GACGCGCGGT GCGATCGAGG ACATGGAGCT CACCAAGCTC GCCCCGGCTG GCGCCGACAT CAAGCGCTTC GAGGACAACA ACGCCACCGT CTCGGCCTTC GTCTCGGGCC AGGTGCAGGC CATCGCCACC GGTGCTTCGG TGGCCGGCAA CATGATGCAG CGCAGCCCGC AGCTGGGCGC CGAATACAAG TTCCTGCTCA AGGACTCGCC CAACTTCATC GGCGTGGGCA AGGGCGAGGA TAAGCTGCGC CTGAAGGTCA ACGAGATCAT CGCCGCCGCC AAGGCCGCCG GTGAGCTCGA CAAGATGGCC GTCAAGTGGC TGGGCCGCCC GGCCGGCGAC CTGCCCAACT GA
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Protein sequence | MQRRPLVMSV VLGLSALLSP LAVQAQAALD TVMSRKLINI AVPTDFPPYG FVGIDLKPQG LDVDMANLIA AKLGVKIELI PVTSANRIPY LQTKKADLVI STLGKNAERE KVIDFTAAYS PFFQAVFAAK GVAIKSPADL AGKTVAVTRG AIEDMELTKL APAGADIKRF EDNNATVSAF VSGQVQAIAT GASVAGNMMQ RSPQLGAEYK FLLKDSPNFI GVGKGEDKLR LKVNEIIAAA KAAGELDKMA VKWLGRPAGD LPN
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