Gene Lcho_3211 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3211 
Symbol 
ID6161612 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3555088 
End bp3555879 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content67% 
IMG OID641665985 
Productextracellular solute-binding protein 
Protein accessionYP_001792234 
Protein GI171059885 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACGCC GCCCCCTCGT GATGTCCGTC GTGCTGGGCC TGAGCGCCCT GCTGTCGCCA 
CTGGCCGTGC AGGCCCAGGC CGCACTCGAC ACGGTGATGT CGCGCAAGCT CATCAACATC
GCCGTGCCGA CCGACTTCCC GCCCTACGGC TTTGTCGGCA TCGACCTCAA GCCGCAGGGC
CTCGACGTCG ACATGGCCAA CCTGATCGCC GCCAAGCTGG GCGTCAAGAT CGAGCTGATC
CCCGTCACCA GCGCCAACCG CATCCCCTAC CTGCAGACGA AGAAGGCCGA TCTGGTGATC
TCGACGCTGG GCAAGAACGC CGAGCGCGAG AAGGTGATCG ACTTCACCGC CGCCTACTCG
CCGTTCTTCC AGGCCGTGTT CGCCGCCAAG GGCGTGGCGA TCAAGAGCCC GGCCGACCTG
GCCGGCAAGA CCGTGGCCGT GACGCGCGGT GCGATCGAGG ACATGGAGCT CACCAAGCTC
GCCCCGGCTG GCGCCGACAT CAAGCGCTTC GAGGACAACA ACGCCACCGT CTCGGCCTTC
GTCTCGGGCC AGGTGCAGGC CATCGCCACC GGTGCTTCGG TGGCCGGCAA CATGATGCAG
CGCAGCCCGC AGCTGGGCGC CGAATACAAG TTCCTGCTCA AGGACTCGCC CAACTTCATC
GGCGTGGGCA AGGGCGAGGA TAAGCTGCGC CTGAAGGTCA ACGAGATCAT CGCCGCCGCC
AAGGCCGCCG GTGAGCTCGA CAAGATGGCC GTCAAGTGGC TGGGCCGCCC GGCCGGCGAC
CTGCCCAACT GA
 
Protein sequence
MQRRPLVMSV VLGLSALLSP LAVQAQAALD TVMSRKLINI AVPTDFPPYG FVGIDLKPQG 
LDVDMANLIA AKLGVKIELI PVTSANRIPY LQTKKADLVI STLGKNAERE KVIDFTAAYS
PFFQAVFAAK GVAIKSPADL AGKTVAVTRG AIEDMELTKL APAGADIKRF EDNNATVSAF
VSGQVQAIAT GASVAGNMMQ RSPQLGAEYK FLLKDSPNFI GVGKGEDKLR LKVNEIIAAA
KAAGELDKMA VKWLGRPAGD LPN