| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3210 |
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| Symbol | |
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| ID | 6161611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3554377 |
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| End bp | 3555054 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665984 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001792233 |
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| Protein GI | 171059884 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGAAC TCGACTTCCT GGCCGTCCTG GCCGAGTGGC CCGCGCTGCT GCGCGGCGCC
GCCTTCACGC TCGGTCTGAG CGCGTTTGCC GCGGTGATCG GCGTGGCGCT CGGCATCGCC
TGCGGCTGGG TGCGCGCCTG GGGGCCGAAA CCGCTGGCCT GGGGCGTGGC CACGTATGTG
GAGCTGATCC GCAACACGCC GTTCATCGTC CAGCTGTTCT TCATCTTCTT CGGCCTGCCG
AGCCTGGGGC TGCGGCTGTC GCCCGAGGTG TCGTCGGTGA TCGCGATGGT GGTCAACCTC
GGCGCCTACG CGGGCGAGAT CGTGCGCGCC GGCATCGAGG GCACGCCGCG TGGCCAGATC
GAGGCCGCGC GCAGCCTGGC GCTCGACGAG GCGCAGGTCT TCATCCGCGT GGTGCTGCCG
CCGTCGCTGG GCCGGGTCTG GCCGGCGCTG GTGAGCCAGA TCGTGATCGT GATGCTCGGT
TCGGCGGTCT GCGGCCAGAT CTCGGCGCAG GAGCTGAGCT ACGCCGCCAA CCTGATCCAG
AGCCGCAACT TCCGCGCCTT CGAGGCCTAC CTGATCGCCG CGGGCATCTA CCTGCTGCTG
GCGATCGGCG TGCGCCAGGC GCTCAACTGG CTGGGGCCGC GCTGGATCTT CGGCCGCATG
CCCGGCTCGG GACGTTGA
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| Protein sequence | MIELDFLAVL AEWPALLRGA AFTLGLSAFA AVIGVALGIA CGWVRAWGPK PLAWGVATYV
ELIRNTPFIV QLFFIFFGLP SLGLRLSPEV SSVIAMVVNL GAYAGEIVRA GIEGTPRGQI
EAARSLALDE AQVFIRVVLP PSLGRVWPAL VSQIVIVMLG SAVCGQISAQ ELSYAANLIQ
SRNFRAFEAY LIAAGIYLLL AIGVRQALNW LGPRWIFGRM PGSGR
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