| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3207 |
|---|
| Symbol | |
|---|
| ID | 6162332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3551612 |
|---|
| End bp | 3552817 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641665981 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001792230 |
|---|
| Protein GI | 171059881 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0738] Fucose permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAACC CCGATCCCTG CGTGCCGGCC CTGCCCGTCA CGCTCGAAAG CCTGCCGGCC
CACGCCCAGC GAGAGCGCCA CGCGCGGGCC CGCTGGGCCA CGCGCGCCTT GTTCGGCGCG
CTCGGCGTGC TGGGCGGCGT GTGGGGCGCG CACATCCCGT CGCTCAAGTC GGTCTACGGG
CTCGACGAGG CGAGCCTGTC GCTGGTGCTG TTCTGCGCCG CGATCGGCGC GGTGAGTTCG
CTGTTCGTCG CCGGGCGGGT GATCGGGCGG CTGGGCGCGC GCCGCACGGC CCTGGTCACC
GGGCTGGTGA TGGCCGCGGC GCAGGCCACC GCGCTGCTCT GGCCATCGGT CTACTTTCTG
ATGTTCGCGT GCCTGTTCTT CGGCACCTCG ATGAGCATCT ACGACGTCGC GATCAACGCC
GAAGGCACCG CGCTCGAACA TCAGTCCGGC CAGCCGGTGA TGGGCAACCT GCACGGCTGT
TTCAGCCTGG GCGCGATGGC CGGCGCGGCG CTGGCGGCGG CGGCCTTGCG TGGCGGCGTC
GACGCGGCGC TGCAGATGGC GCTGTCGGGC GCGCTGCTGG GTGGCGTGGC GCTGAGCGTC
GGCCGCCACA TGCTCGACGC CCGCCCGACG CCGCCCACCG ACGGCTCGGC GCAGGTGCAC
TTCGTCTGGC CGCGTGGCCT GCTGCTGGTG ATCGGCCTGC TGATCTTTGC CGGCATGACC
GCCGAGGGCG TGATGTACGA CTGGTGCGTG CTCTACCTGA AGCAGGAAGT CGGCATGCCG
CAGGACCTGG CCGCGCTCGG TTACGCCGCC TTTGCCGGCG CGATGGCCGT GGCCCGCTTC
GGCGGCGACG CGCTGCGCTC GCGTTATTCC GAACGCACGC TGCTGCGCAA CAGCGCGCTG
CTGGCCGCAG TGGCGATGGC GGTGGTGCTG ACCAGCGGCG AGGCCTGGGT CTCGCTGATC
GGCTACGCCT TCGTCGGCGC CGGCCTCGCG CCGATCGTGC CCATCCTCTA CACCGCGGCC
AGCCGCGTGC CCGGCACCAG CAGCGCGGCG GCGATCGCGG CGGCCTCGTC GATCGGCTAC
AGCGGCTTCC TGGTCGGCCC GCCGCTGATC GGCGGCATCG CGCACGCCTG GTCGCTCACG
GCGGCAATGA CGGTGGTGGT GATCGCCGCG GCGGCGCTGG CAATCGGGGC GCGGCGGGTC
GGCTGA
|
|---|
| Protein sequence | MTNPDPCVPA LPVTLESLPA HAQRERHARA RWATRALFGA LGVLGGVWGA HIPSLKSVYG
LDEASLSLVL FCAAIGAVSS LFVAGRVIGR LGARRTALVT GLVMAAAQAT ALLWPSVYFL
MFACLFFGTS MSIYDVAINA EGTALEHQSG QPVMGNLHGC FSLGAMAGAA LAAAALRGGV
DAALQMALSG ALLGGVALSV GRHMLDARPT PPTDGSAQVH FVWPRGLLLV IGLLIFAGMT
AEGVMYDWCV LYLKQEVGMP QDLAALGYAA FAGAMAVARF GGDALRSRYS ERTLLRNSAL
LAAVAMAVVL TSGEAWVSLI GYAFVGAGLA PIVPILYTAA SRVPGTSSAA AIAAASSIGY
SGFLVGPPLI GGIAHAWSLT AAMTVVVIAA AALAIGARRV G
|
|---|
| |