Gene Lcho_3190 details

Gene Information

• Locus tag: Lcho_3190
• ID: 6162792
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3527738
• End bp: 3529723
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 641665964
• Product: hypothetical protein
• Protein accession: YP_001792213
• Protein GI: 171059864

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 0.000624567
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAGCGGAC AGCAGCGGCC CGCCGCGTCG CCTCTGCCCC CGCTGTCCGC ACCGTCGGGC 
AGCCGCATCG AACACGTCAC CCAGGAAAGA CCGGTCAACT GGCTGAACCC GCTGCAGCTG 
CTGCAGTCGG GCCTGCTGGC GGCGCTGGCC GGGGTGGTCG GCAGCTTTGC CGACAGCCGT 
GCGCTGCAGG CCGCACGCGG CGCCAACGGC GCATCGGCCG CGGCCGACGC CCGCGAAACG 
GCCGCACGCG AGCGCCTGCG CAACGCCGAC AGCGTCTGGA TCGACTACAT CGCCGACACC 
GGCGACGGCT GGGACGCCAC CTACACGGTG GCCCACACGC TGGCGCGCGA CGCGATCGAG 
ATCGACGGCC GGCGGCTGCC GCGTGCCGAC CTGCTGCTGA TGGGCGGCGA CCAGGTCTAC 
CCCACGCCCG CCGGCAGCGC CTACCGCACG CGCCTGGTCG ACCCGTTCGG CAGCGCCCTG 
CCCGGCCGGC CTGCGGGCGC CGACCCGCAG CTCGACCCCG CCGCGCCGCT GCTGCTGGCC 
ACCCCCGGCA ACCACGACTG GTACGACGGC CTGCGCGGCT TCAACAACCT GTTCTGCAGC 
GGCCAGAACC TGGGCGGCTG GCAGAGCTTC CAGCGCGGCA GCTATTTCGC GGTGCAGCTG 
CCGCACGGCT GGTGGCTGTG GGGCCTGGAC CTGCAGCTCG AATCCGAGCT CGACGGCCCG 
CAGCGCGACT ACTTCACCGC CCAGGCGACA AAACTCGACG CCGGCGCCCG CGTGCTGCTG 
CTGGTGCCCG AGCCGAGCTG GATCGACGAG GGCAGCTTCC GCGCCAGCAC CCAGAACGAC 
AGCGACAAGC TGCGCACGAT CGAGGTGCAG CGCGCGCGCA CCCGCGGCTG GAAGGAGATC 
GAGTCGATGG TCGCCACCCG GGGGGGGCGG GTGGCCGCCA CGCTGGCCGG CGATCTGCAC 
CATTACGCAC GTTACGCCCC GGCGGCCGGG CCGACCGACG CGCCCGCTGC GGCAGCGCCG 
CTGGCCGCGC CGCAGCGCAT CACCTGCGGC GGCGGCGGTG CTTTCATGCT CGGCACCCAC 
CACCTGCCCG GTGAACTGCA GATGGGCCGG CGCGGCCAGC CCGCCGTGCA GCGCCTGGCC 
GCCACCTATC CCGCCATCGG CGAGTCGAGA TCGCTGCGCA ACCGGGCCTG GCAACTGCCG 
TTCACCAACC CGACGTTCGG GCTGACGCTG GGTTTCATCT ACCTGCTCTA CGCCTGGCTG 
CTGCAGAGCG CCAGCCTGCA GCCCGGCGCG CTGGCCATGG GCAGCAGCCT GTTCGCGCAG 
CTGGCGCAGA CGCCGTGGTC GTTCGCGAAC GGCAGCGGCC TCACGGCCAT CGTCGGCGGC 
TTGTGGCTGG CCAGCCCGGC GGCGCTGCTG TGGGCCTTGC TGATCGTGCT GGGTGCGGCG 
GCCTTCACCG GCAGCAGCAC CGGCGGCAAG CCGGCGTTGC CCGGCTGGAT CGGCGGGGCG 
CTGCACGGCC TGCTGCACCT CAAGCTGGCC GGTTGCCTGA TCTGGGCGCT GGCGCGGCTG 
GACCTGTTCG GCTGGGCCGG TGCCAGCGCC TGCAGCCAGG GCTGCGGCGG CGCGGCGCTG 
CCGTCGCTGC TGCTGAGCCT GCAGGTGGGG CTGGGCGGCT GGCTGATCGG CTGCCTGCTG 
TTCGGCCTGT GGCTGGTGGC GTGCGACGCC TGGGCCGGCT GGCACGAGCA GGAGGTGTTC 
TCGGCCCAGT CGCTCGGCAG CCACCGCTGC TTTTTGCGCA TGCGGGTCAG CCGCGACGGG 
CTCGAGATCC ACCCGATCGG CATCGCCGCG GCGGCCCGGC GCTGGCGGCC CGGCCGCGGC 
GTGACGGTGC TGCAGAAAAT CCGCGACACC CTGCGCCTGC GGGTCGAGGC CGGCGCCGGC 
TCGCGTTTCG AGCCCGAGAC CCCGATCACC CCGGTGGCCA TCGAGCCCTG CATCACGGTG 
CGCTGA 

 

Protein sequence

MSGQQRPAAS PLPPLSAPSG SRIEHVTQER PVNWLNPLQL LQSGLLAALA GVVGSFADSR 
ALQAARGANG ASAAADARET AARERLRNAD SVWIDYIADT GDGWDATYTV AHTLARDAIE 
IDGRRLPRAD LLLMGGDQVY PTPAGSAYRT RLVDPFGSAL PGRPAGADPQ LDPAAPLLLA 
TPGNHDWYDG LRGFNNLFCS GQNLGGWQSF QRGSYFAVQL PHGWWLWGLD LQLESELDGP 
QRDYFTAQAT KLDAGARVLL LVPEPSWIDE GSFRASTQND SDKLRTIEVQ RARTRGWKEI 
ESMVATRGGR VAATLAGDLH HYARYAPAAG PTDAPAAAAP LAAPQRITCG GGGAFMLGTH 
HLPGELQMGR RGQPAVQRLA ATYPAIGESR SLRNRAWQLP FTNPTFGLTL GFIYLLYAWL 
LQSASLQPGA LAMGSSLFAQ LAQTPWSFAN GSGLTAIVGG LWLASPAALL WALLIVLGAA 
AFTGSSTGGK PALPGWIGGA LHGLLHLKLA GCLIWALARL DLFGWAGASA CSQGCGGAAL 
PSLLLSLQVG LGGWLIGCLL FGLWLVACDA WAGWHEQEVF SAQSLGSHRC FLRMRVSRDG 
LEIHPIGIAA AARRWRPGRG VTVLQKIRDT LRLRVEAGAG SRFEPETPIT PVAIEPCITV 
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