Gene Lcho_3187 details

Gene Information

• Locus tag: Lcho_3187
• ID: 6162789
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3523963
• End bp: 3525987
• Gene Length: 2025 bp
• Protein Length: 674 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641665961
• Product: TPR repeat-containing protein
• Protein accession: YP_001792210
• Protein GI: 171059861

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 20
• Fosmid unclonability p-value: 0.00134162
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCGCCCGC ACGCCTTCAT CGCCATGCCC TTCGGCACCA AGCCGGGGCC GGACGGCACG 
CCGATCGACT TCAACCGCAT CTATGCCGAG CTGATCCAGC CGGCGCTGAA GCTGGCCGAC 
TGCGCGTGTT TCCGGGCCGA CCAGGAACTG CGCGCCGGCG ACATCCGCGC CGACATGTTC 
CAGGAGCTGC TGGTGGCCGA CCTGGTGATC GCCGACCTGA CGATCGACAA CCCCAACGTC 
TGGTACGAAC TGGGCGTGCG GCATGCGCTG CGCGCGCGTG GCGTGGTGCT GATCCAGGGA 
CCGCGCAACG CCAATCCGTT CGACATCTAC ACCGACCGCA AGCTGGTCTA CGCGCTGCGC 
GCCGACGGCA CGCTCGACCC GGCGCTGCTC GACGCCAACC GCCGCTCGCT GGCCGAGATG 
GTCAAGGCCA CGCTCGACAC GCCGACGCGG CGCAAGGTCA GCCCGGTCTA CAGCCTGCTG 
CCGCACCTGG AGCAGCCGCA GTGGCAGAAA CTGATGCTCA GCGAGGCCAA CGAGTTCAGC 
GAGGCGCACG CCGCCTGGGC CCGGCTGATG GAGAACGCCC GCCAGAAGCA CCGCCCCGGC 
GACATCCTGC TGCTGGCCGG CGAAACCCCC ACCCGCGCGT TGCGCACCGA GGCGCTGCGC 
ACGGCCGGCA ACGCGCTGCT CAAGCTGCGC CACCACGACT TCGCGCTCGA GCAGTTCGAG 
GCCGCGCTGG CGGTCGAGCC CGACGACCTG CCCAGCCGCG AGAAGAAGGC GATCTGCCTG 
GGCCTGCTGG GCCGGGTCGA GGAAACCCAG ACCTGGGTCG ACATGCTGAC CCAGTCCCAG 
CCCGACAGCC CCGAGGTCTG GGCGCTGGCC GGGCGGGTGG CGCGCGAGCT GTGGATCCGC 
CGCTGGCACC CGGCACCACC GACCGCCGAG CAGGACGAGA CCGCCGCGCC CTCGGCCGGC 
CCGCCCCCCG ACAGCACCGC GCTGCGCGCC GCGGCGGCCG AGGAGGACGC CAGCCTGGAG 
CGCGCGATCG AGCCCTACCT GACCGCCTTC GTGGCCGATG CGCGGCATTT CTATTCGGGC 
ATCTGCGCGC TCAACCTGAT GCTGCTGCGC CAGCACCTGG GCGGCACGGT CGATGCCGAT 
GCGCTGCAGT GCCTGATCGG CGGCGTGCGC TGGGCCTGCC GCAGCGCGAT CCAGAGCCGC 
GGCAAGACCG ACGCATCCGA CTACCGGCTG ATGGCCAGCC GGGCGGAGCT GGCGCTGCTG 
CTCGAACCGC TGGCGGAGGT GCGCCGGCAC TTCAAGGCCG CGCTCGCCAC CGCCGGGCGC 
GACTGGTTCG CGCTCGACAG CACCCGCCAG ATGCTGCTGC TGCTGCGCGA CCTGGGTTTC 
CGCCCCGAAG AGACCGCCGC CGCGCTGAAC CTGCTCGACA AGGAACAGGC GCTGCTGCGC 
GCGCCGGTGC GGCCGCGCCA GGTGTTCCTG TTCTCGGGCC ACATGATGGA CGCGCCGGAC 
CGCGCCAGCC CGCGCTTCCC GCCGCAGATG GAGGCGGCCG CGGCCGAGCG CATCGCCAAG 
GCGCTCGACA GCCAGGACGC CGGCCCGCAG GATCTGGCGC TGTGCCAGGC CGCAGCCGGC 
GGCGACCTGA TGTTCCTGGA GGCCTGCGTC GCCCGCGGCA TGCACATCCA GATCCTGCTG 
CCGTTCGACG AGGCCAGCTT CGTCGAGAAC TCGGTCAGCC AGAGCGCTGC GCCGCTCACC 
GGCGACGACT GGCCGATGCG CTATTACGCG GTGCAGTCCA GGCTGCGCAC GCCGCCGCGC 
GTGATGCCGC ACGAGCTCGG CCCGCTGCCC CGTGGCGCCG ACCCCTACGA ACGCTGCAAC 
CTGTGGCTGC TCGACACGGC GCTGTCGTGG GGTGTCAAGA AACTGCGTTT CATCACGCTC 
TGGAACGGCG GCGGCGGCGA CGGCCCCGGC GGCACCGCGC ACATGCTGCG CGAGGTCAAG 
CGCCGCACCG GCCGCGTGAC CTGGATCGAC ACGCGCAAGT TGTGA 

 

Protein sequence

MRPHAFIAMP FGTKPGPDGT PIDFNRIYAE LIQPALKLAD CACFRADQEL RAGDIRADMF 
QELLVADLVI ADLTIDNPNV WYELGVRHAL RARGVVLIQG PRNANPFDIY TDRKLVYALR 
ADGTLDPALL DANRRSLAEM VKATLDTPTR RKVSPVYSLL PHLEQPQWQK LMLSEANEFS 
EAHAAWARLM ENARQKHRPG DILLLAGETP TRALRTEALR TAGNALLKLR HHDFALEQFE 
AALAVEPDDL PSREKKAICL GLLGRVEETQ TWVDMLTQSQ PDSPEVWALA GRVARELWIR 
RWHPAPPTAE QDETAAPSAG PPPDSTALRA AAAEEDASLE RAIEPYLTAF VADARHFYSG 
ICALNLMLLR QHLGGTVDAD ALQCLIGGVR WACRSAIQSR GKTDASDYRL MASRAELALL 
LEPLAEVRRH FKAALATAGR DWFALDSTRQ MLLLLRDLGF RPEETAAALN LLDKEQALLR 
APVRPRQVFL FSGHMMDAPD RASPRFPPQM EAAAAERIAK ALDSQDAGPQ DLALCQAAAG 
GDLMFLEACV ARGMHIQILL PFDEASFVEN SVSQSAAPLT GDDWPMRYYA VQSRLRTPPR 
VMPHELGPLP RGADPYERCN LWLLDTALSW GVKKLRFITL WNGGGGDGPG GTAHMLREVK 
RRTGRVTWID TRKL