Gene Lcho_3186 details

Gene Information

• Locus tag: Lcho_3186
• ID: 6162969
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3521948
• End bp: 3523882
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 75%
• IMG OID: 641665960
• Product: hypothetical protein
• Protein accession: YP_001792209
• Protein GI: 171059860

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 20
• Fosmid unclonability p-value: 0.00117321
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGCCGACC CCCGACCCGC ACCGGACCGC CCGGCGCCAT CCACGCGCAA GGCCATCTTC 
ATCAGCTACC GCAGCGCCGA CGGCAAGAAG GACGCGGCGC GGCTGGCCGA GGACCTGCGC 
GACATCTTCG GTGCGCCGCA GGTGTTCTTC GACAAGCACG ACCTGCAGGG CGGCAGCTCC 
TGGCGCGAGC AGATCGGGCA GGCGCTGGGC CAGCAGCCGG TGGTGCTGCT GATCATCAGC 
GAGCAGTTCT TCGGCGCCCG GAACGAGCAG GGCCTGCGCA TCGATCAGCC CGACGACCCG 
GTGCGCATGG AGGTGATCGA CTCGATGCGG GTCGGCGCGC GCCTGCTGCC GCTGCTGTGC 
GAAGGCGTGC GCATGCCGTC GAGCGCCAGC CTGCCGGTCG AGCTGCGCAG CGTGCCGGAG 
GCGCATGCGC TGAAGCTGCG CACCGAAGAC TGGCGCGCCG ACCTGCTCAA GCTGGCCGAC 
CGGCTGGTGG CGCTGGGCAT CGCGCCGCTC GATGACGACT GGCGCGAGCA GTTCACCGCA 
CCACCGGGCA CGGCCCGGCG CGGGCGGCTG CGCCAGTCGC TGGGGGTCGC GGCGGTGCTG 
CTGGCGCTGG GCGGCGGCGG GGCCTACTGG TTTCACACCG AGCAGCTGCA GCGCGAGGCC 
GCGGCCGTCG AAGCGCGCCG CCTGCGCGCG CTGCAGCACG TCAGCGACGG CCTGGCGGCC 
GATCACGGCA AGGACGTCAA CCTCGAGCTG GCACGCCGCA AGTACCTGGC CGCGATCGAG 
GAACTGCCCG ACTACGGCCC GGCGCACTAC TACCTGGCGC AGGTCTACGC CACCCAGACG 
CTGCGCGCCG ATGCGCTCGG CCACTACCGC ACCGCACTGG CGCACCCGAA CGGCCTCGAC 
CGCGCCCAGC TGGCCGATGC GCGCAGCCGG CTGGCCGCAC TGGAGAGCAG CGCCGCCGAG 
CCCGAGGCGG TGGGTGCGCC GCCGATCGTC GGTTCGGCCG CGCCGACGCG CCCGTCCACC 
GGCCAGGTGC AGCCCGCCCC GGTGCCCAGG CCGGCCCCGA TGCCGGCGCC CGTGGTGCGG 
CCGCCGCCGG CGGTGGTCGC CGCCGCACCG GACGCGTCGG ACAAGGCCTT GCTGGACGCC 
CCGGTGGCCG GTGCCGCACC ACCGCCGCGG GCGACCTCGC TGCCGCGCCT GCCGATGACC 
GATCCGCAGC CCACCCAGGC CGTCGACCTG GTGCACCGGG TGGCGCCACT GCCCGATCGT 
CAGCGCCAGG CCCAGGCCCA GGCGGCCGCG CTGTTTGCGG ACGATCCGGC CGAACGCCTG 
GCCGCCGCCA CCACGCTGGG GGTCGAGCAG AACCTGGCCG CCGACGTGCT GCCGCTGGCG 
CTGGCGCGTG CGCTCGCGGC GGCGCAGCGC CAGGCCGACA AGGACGGCGA CCGCGCCGGC 
CTGATCGCCA CCTGGCGGCT GGTCGGCCAG GCCAGCCCGC TGAGCCTGCA GGCCGAACGG 
GCCGCCATCG AGGCGCTGTT CCAGGCCACC GGCCCGCTCG ACACGATGAT CAAGCTGCAA 
GGCGGCGTGA TCGGCGCGAT GGAAAAGCTC CGTGCTGCCG GCGACCTGCG GCCGCGGGTC 
TACATCCAGA TCGCCAGCAA CGCGCAGCGG GCCTTCGCCA CCCGGCTGGC GAGCCGGCTC 
GAGCGCGCCG GCTACGACGT GCCGGGCATC GAGAACATCG GCGCCAAGGC GCCCCGGCAG 
ACCGACCTGC GCGCCCAGGG CGCCAGCAAT CCGGGCCTGG CGCGCTGGAT GCGCAAGGTG 
ATCACCGAAA CCACCGGCGC GCCGGTGGCG CTGCGGGTGC TGCAGCGTGC GCAGCCGGCG 
ATCGACACCT ACGAGATCTG GCTCGGCCAG GACCTGTGCG TCGCCGCCGA CGCACAGCCG 
AGCGACTGCC GTTGA 

 

Protein sequence

MADPRPAPDR PAPSTRKAIF ISYRSADGKK DAARLAEDLR DIFGAPQVFF DKHDLQGGSS 
WREQIGQALG QQPVVLLIIS EQFFGARNEQ GLRIDQPDDP VRMEVIDSMR VGARLLPLLC 
EGVRMPSSAS LPVELRSVPE AHALKLRTED WRADLLKLAD RLVALGIAPL DDDWREQFTA 
PPGTARRGRL RQSLGVAAVL LALGGGGAYW FHTEQLQREA AAVEARRLRA LQHVSDGLAA 
DHGKDVNLEL ARRKYLAAIE ELPDYGPAHY YLAQVYATQT LRADALGHYR TALAHPNGLD 
RAQLADARSR LAALESSAAE PEAVGAPPIV GSAAPTRPST GQVQPAPVPR PAPMPAPVVR 
PPPAVVAAAP DASDKALLDA PVAGAAPPPR ATSLPRLPMT DPQPTQAVDL VHRVAPLPDR 
QRQAQAQAAA LFADDPAERL AAATTLGVEQ NLAADVLPLA LARALAAAQR QADKDGDRAG 
LIATWRLVGQ ASPLSLQAER AAIEALFQAT GPLDTMIKLQ GGVIGAMEKL RAAGDLRPRV 
YIQIASNAQR AFATRLASRL ERAGYDVPGI ENIGAKAPRQ TDLRAQGASN PGLARWMRKV 
ITETTGAPVA LRVLQRAQPA IDTYEIWLGQ DLCVAADAQP SDCR