| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3174 |
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| Symbol | |
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| ID | 6161596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3505949 |
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| End bp | 3509212 |
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| Gene Length | 3264 bp |
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| Protein Length | 1087 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665949 |
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| Product | GAF sensor hybrid histidine kinase |
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| Protein accession | YP_001792198 |
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| Protein GI | 171059849 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.00134389 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCTGC GAGGGCGCCT CATCCTGCTG CTGGCCGGCG CCTTCGCGGT ACTGGGCGCG
CTGCTGGGCT GGCACCTCGT CAAGGATCGG GACCGCCAGA TCGCCCACGC CAAGGAGAGC
CTGCTCGACG AGGTGCGGCT GATCGCGGCG CGCCAGGAGG TGCTGGTCGA GCGCGCCGAC
GCGATCCTCA ACGGCCTGAT GCTCAATCCG GCCTGCGACG TCGCGACCCT GACCCCGGCC
TGCCAGCTGC AACTCGCGCA GCTGCTCACA CGCGAGCCCG ACTACGTGCA AGTGGGCGTG
GCCCGCCCTG GCGGCGACAT CGCCAGTTCC GGTGTCATGG CCACCCGCCC GGTCAACCTG
GCCGATCGCG ACTGGTTCCG GCGCACCCTG AAGGCCCGCG ACATCGTGGT CGGCGACGTG
GTCGTGAGTC GGATCGTCGG CAAGCCGGGC ATCACCCTCA GCAAGGCCAA GCGCGATGCA
CAGGGGCAGG TGAGCGGGAT CTACTACGTC GGCCTCAGCC TGGACTGGAT GGCCCGCGCC
CTCGCCAGGA TCCACGTGCA GGACGACGCA CGGCTGACGG TGATGGACGG CCAGGGGAGC
ATCGTCGCGC GCTTTCCCGA CCCGGAAAAA TGGACCGGCA CGCCCGCCAG GACGCCGGCC
GCCCGCAAGG TGCTCGAGGC CCGCGTCGAC GGCACCCTGG AGGACAGCGA CCGGGCCGGA
GAACGCAAGC TGATCGCCCA TGCCCCGCTC CTGACCACCA GCTCGGGCAG CCGGTACAAG
CTGCTGCTGG CCGTCCCCAG GGACGCGATC CAGGCGTCGG CACACCGCGA TGCGATCGTC
ACGCTCGGCG CCCTGGCGCT GGTGCTGATC GGCACGGCCG CGGCCTTGCT GGCCGGGGTC
GACCGATGGG TGCTGCAGCC GATCCTGACG CTGGCGCAGA CCGCCCATCG CCTGCGCTCG
GGCGAGCTCG ATGCGCGCAG CGGCCTGCCG CACAACGGCG ACGAGATCGG CACCCTGGCG
CAGGCGCTCG ACGAGTCGTC GTCGGCGATC GAGGATCGCG AGCACCGCCT CGCCTATGCG
AACCGGGCGC TGCGGGTGGT GTCGGCGGGC AACCACACGC TGCTGCACGG CCATCGCGAG
CGCGAGCTGC TCGAGCAGAT GTGCCGCGCG ATCGTCGAAG CCGGCGGGTT CCGCATCGCC
TGGATCGGCT ACGCCCAAGG CGACCGGCAG GTGCGCCTGA TGGCCTCGTG CGGCGCCGTC
CCCGGCCTGC TCGAGAACCT GCACGTGACC TGGGACGAAT CGGCCACCGG TCGGGGCCCG
GTCGGCCGGG CGATACGCCA GGGCACGATC GAGGCCTGGA GCAGCACGCA GGAGCACCCC
GACGATGCCG TCTGGCGCGA GGGCGCGCTG GCGCGCGGCT GCGCCGCGAC CCTGACCCTG
CCGGTGCGGC TGGGTGACGA GGTGATCGGC GTCCTGAACA TCTGCGCCGC CGAGCCGGAC
GTGTTCGACC CGGGCGTGAT CGAGGTCCTG ACCGAAGCCT CGCGCGATCT GGCCATGGGC
ATCAGCGTCG CGCGCACGCA GGTCGAGCGC GAGAAGGTCG ACGAGCAGCT GCGCCGGCAC
CGCGAGCAGC TGGAGGAGCT GGTCGCCGAA AGAACCGCCG CGCTGGCCGT GGCCAAGGAT
GCCGCCGAGG TGGCCAACCA GTCCAAGACC GCCTTCCTGG CGAACATGAG CCACGAGATC
CGTACCCCGA TGAACGCCAT CATCGGGCTC ACGCACCTGA TGGCGCGCGA CAGCCGCGAC
GCGCTGCAGC GCGATCGGCT GCGCAAGGTC GACGGCGCCG CCCGGCACCT GCTGCAGATC
ATCAACGACA TCCTCGACCT GTCCAAGATC GAGGCCGGCA AGATGGGACT CGACGACATC
GAGTTCTCGC GCGACGAACT GCTGTCGGGC GCCCTCGAGA TGGTCGGCGA GGTGGCCGAC
GCGAAGGGCC TGGAACTCGC GCTCGATGCC GGCAACCTGC CCGAGCGCAT GCGCGGCGAC
CCGAAGCGGC TGGCGCAGGC GCTGATCAAC CTGCTGGCCA ATGCGGTCAA GTTCACCGAG
CACGGCTGGG TGCGGCTGCG CGGCGAGCTG CTGGCCGACC AGGGCGGGCG GCTGCAGGTT
CGATTCGAGG TGCGGGACTC GGGCATCGGC ATCTCGCCCG AGCAGCAGGG CGTGCTCTTC
AATGCCTTCG CGCAGGCCGA CGCATCGACC ACCCGGCGGC ACGGCGGCAC CGGCCTGGGC
CTGGCGCTGA CACGCCACAT CGCCGCGATG ATGGAGGGCG AGGTCGGGCT GGTGAGCCAG
CCCGGCGAGG GCAGCAGCTT CTGGTTCACC GGCTGGCTGC GGCGCGCCGC CGGCAGCATC
GCGATGCGCG GCGAACCGCG CCTGCAGGGG CTGCGTGCGC TGGTGGTGGA CGACCTGCCG
GAGGCGCTGG ACGCGATCAC CGCCACCCTG GGCGCGCTGG GGCTGCAGGT GGACGCGCAC
CTCACCGGCC GCGCGGCCGT CCGCCGCGTG CAGGACGAGG CCGCCGAAGG CCGGCACTTC
GACGTGATGC TGGTCGACTG GCGCATGGCG CCGCTGGACG GCCTGGCCAC GCTCGGCGAA
CTGCGGCGCG CCTGCGGCGA CCGCATGCCG CCCTTCGTCC TGCTGGCGGC GTTCAACGAT
GCCCAGATGC GCCGCCAGGC CCGCGAGGCG CGGGTCGATG CGGTGCTGGT CAAGCCCGTC
ACGCCATCGG CCCTGCAGGA ATCGCTGCTG CAGGTGCTGC AGGGCCATCA CAAGGACTCC
GTCGCCGCGC CGCTGGACGA AAGCGAGGCC GAGAGCGAAC TCAGGCGCCG GCACGCCGGG
CAACGGGTGC TGCTGGCCGA GGACAACCCG ATCAACCAGG AAGTCGCCCG CGAGCTGCTG
GCATCGGTGG GCCTGACGGT CGACGTCGTG GCCGACGGCG CGGGCGCGTT GGCACAGGCC
CAGGAAGGCC GCTACGACCT CGTGCTGATG GACGTGCAGA TGCCGGGCAT GGACGGCCTC
GAGGCGACGC GACAGATCCG CGCCCGCATG GGCCACGGCC TGCCCATCAT CGCCATGACG
GCGAACGCCT TCGGCGACGA CCGCCTCGCC TGTCTCGACG CCGGCATGAA CGCCCACATC
GGCAAGCCGG TCGACCCGGC GCTGCTGTAC GCCACCGTCC TGCGCTGGCT GCCGCCACCG
GGGGCGGCAC GGCCGCACGG CTGA
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| Protein sequence | MSLRGRLILL LAGAFAVLGA LLGWHLVKDR DRQIAHAKES LLDEVRLIAA RQEVLVERAD
AILNGLMLNP ACDVATLTPA CQLQLAQLLT REPDYVQVGV ARPGGDIASS GVMATRPVNL
ADRDWFRRTL KARDIVVGDV VVSRIVGKPG ITLSKAKRDA QGQVSGIYYV GLSLDWMARA
LARIHVQDDA RLTVMDGQGS IVARFPDPEK WTGTPARTPA ARKVLEARVD GTLEDSDRAG
ERKLIAHAPL LTTSSGSRYK LLLAVPRDAI QASAHRDAIV TLGALALVLI GTAAALLAGV
DRWVLQPILT LAQTAHRLRS GELDARSGLP HNGDEIGTLA QALDESSSAI EDREHRLAYA
NRALRVVSAG NHTLLHGHRE RELLEQMCRA IVEAGGFRIA WIGYAQGDRQ VRLMASCGAV
PGLLENLHVT WDESATGRGP VGRAIRQGTI EAWSSTQEHP DDAVWREGAL ARGCAATLTL
PVRLGDEVIG VLNICAAEPD VFDPGVIEVL TEASRDLAMG ISVARTQVER EKVDEQLRRH
REQLEELVAE RTAALAVAKD AAEVANQSKT AFLANMSHEI RTPMNAIIGL THLMARDSRD
ALQRDRLRKV DGAARHLLQI INDILDLSKI EAGKMGLDDI EFSRDELLSG ALEMVGEVAD
AKGLELALDA GNLPERMRGD PKRLAQALIN LLANAVKFTE HGWVRLRGEL LADQGGRLQV
RFEVRDSGIG ISPEQQGVLF NAFAQADAST TRRHGGTGLG LALTRHIAAM MEGEVGLVSQ
PGEGSSFWFT GWLRRAAGSI AMRGEPRLQG LRALVVDDLP EALDAITATL GALGLQVDAH
LTGRAAVRRV QDEAAEGRHF DVMLVDWRMA PLDGLATLGE LRRACGDRMP PFVLLAAFND
AQMRRQAREA RVDAVLVKPV TPSALQESLL QVLQGHHKDS VAAPLDESEA ESELRRRHAG
QRVLLAEDNP INQEVARELL ASVGLTVDVV ADGAGALAQA QEGRYDLVLM DVQMPGMDGL
EATRQIRARM GHGLPIIAMT ANAFGDDRLA CLDAGMNAHI GKPVDPALLY ATVLRWLPPP
GAARPHG
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