| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3172 |
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| Symbol | |
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| ID | 6161654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3502995 |
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| End bp | 3503279 |
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| Gene Length | 285 bp |
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| Protein Length | 94 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665947 |
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| Product | XRE family transcriptional regulator |
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| Protein accession | YP_001792196 |
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| Protein GI | 171059847 |
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| COG category | [K] Transcription |
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| COG ID | [COG2944] Predicted transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00100844 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGCACGG CATTCGAGAG CATCCGGCAA GGCCTGAAGG AGGCCACCGC CCACGCGCGC
GGTGATGCCG CAGGCGTCAA GGTCTACGAA CCCACCGCGG TGGACGTGGC CGCGGTGCGC
GCCCGGCTGG GGCTGACGCA AGCCCAGTTC GCGGCCCGCT TCGGGTTTTC TGTGGCGACG
CTGCGCCACT GGGAGCGCGG CGACCGCCGG CCGCAGGGTC CGGCCCTGGT ACTGCTGAAC
CTGATCGAGC GCGAGCCGGC GGCCGTGATG CGGGCGCTTG CCTGA
|
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| Protein sequence | MSTAFESIRQ GLKEATAHAR GDAAGVKVYE PTAVDVAAVR ARLGLTQAQF AARFGFSVAT
LRHWERGDRR PQGPALVLLN LIEREPAAVM RALA
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