Gene Lcho_3166 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3166 
Symbol 
ID6161648 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3499320 
End bp3500207 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content65% 
IMG OID641665942 
Productintegrase catalytic region 
Protein accessionYP_001792191 
Protein GI171059842 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0141846 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTACC AGTTCGTCGA GCAACTGCAC AAGAAGGCCG TCACCGTCGA GCGTCTATGC 
CGCGTGCTGG GCGTCAGCCG TTCGGGCTAC TACGGTGCCC GTCAGCGCGC CAAGCTCGCG
CCCAAGGCCT GCTTGGTCAG CACGCAATTG AAGGCCGAGT TCGCCGCCAG CGGCCGCGTC
TATGGCAGCC GTCGCCTGTG CGCAGTGCTG CGCGCTCGGG GGCTGGGCAT CGGGCGCCAC
CGGGTGCGAC GTTTGATGCG CGAGAACAGG TTGCGGGCCC TGTGGCGACG CAAGTTCATG
CACACCACCG ACAGCGGTCA TGCGCTGCCC GTCTCTGACA ACCTGCTGGC ACGGCGCTTC
AATCCGAGCC GCCCCAACCA GGCCTGGGTG AGCGACATCA CCTACATCCG CACGCGCAGC
GGCTGGCTGT ACCTGGCCGT GGTGCTGGAC CTGTACGCCC GCAAGGTCGT GGGCTGGGCG
ATGGCGCCGA CGATGCATGC CGAGTTGGTG TGCGCAGCGC TGCAACTGGC CATTGCGCAG
CGCCAACCCG CGCCAGGGCT GATTGTTCAT TCCGACCGAG GCAGCCAGTA CGCCAGCGCG
TTGCATCAGG CGCTGCTGGC GCGCCACGGC CTGGTCGGCA GCATGAGCCG CAAGGGCAAC
TGCTGGGACA ACGCGGTGAT GGAACGCTTC TTCCTGAGCC TCAAGACCGA GCGGGTCTGG
CAGCGCGACT ACGCCAACCA TGCCGAGGCC ATGACCGACA TCGCCGACTA CATCGTGGGC
TTCTACAACA GCGTGCGGCT GCACTCCAAA CTGGGCAACC TGCCACCCAA TGCCTTCGAG
CAGCAATCGG CAATCAAACA ACCTATCGTG GTGTCCGAAA AAACTTGA
 
Protein sequence
MSYQFVEQLH KKAVTVERLC RVLGVSRSGY YGARQRAKLA PKACLVSTQL KAEFAASGRV 
YGSRRLCAVL RARGLGIGRH RVRRLMRENR LRALWRRKFM HTTDSGHALP VSDNLLARRF
NPSRPNQAWV SDITYIRTRS GWLYLAVVLD LYARKVVGWA MAPTMHAELV CAALQLAIAQ
RQPAPGLIVH SDRGSQYASA LHQALLARHG LVGSMSRKGN CWDNAVMERF FLSLKTERVW
QRDYANHAEA MTDIADYIVG FYNSVRLHSK LGNLPPNAFE QQSAIKQPIV VSEKT