| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3166 |
|---|
| Symbol | |
|---|
| ID | 6161648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3499320 |
|---|
| End bp | 3500207 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641665942 |
|---|
| Product | integrase catalytic region |
|---|
| Protein accession | YP_001792191 |
|---|
| Protein GI | 171059842 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2801] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0141846 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTACC AGTTCGTCGA GCAACTGCAC AAGAAGGCCG TCACCGTCGA GCGTCTATGC
CGCGTGCTGG GCGTCAGCCG TTCGGGCTAC TACGGTGCCC GTCAGCGCGC CAAGCTCGCG
CCCAAGGCCT GCTTGGTCAG CACGCAATTG AAGGCCGAGT TCGCCGCCAG CGGCCGCGTC
TATGGCAGCC GTCGCCTGTG CGCAGTGCTG CGCGCTCGGG GGCTGGGCAT CGGGCGCCAC
CGGGTGCGAC GTTTGATGCG CGAGAACAGG TTGCGGGCCC TGTGGCGACG CAAGTTCATG
CACACCACCG ACAGCGGTCA TGCGCTGCCC GTCTCTGACA ACCTGCTGGC ACGGCGCTTC
AATCCGAGCC GCCCCAACCA GGCCTGGGTG AGCGACATCA CCTACATCCG CACGCGCAGC
GGCTGGCTGT ACCTGGCCGT GGTGCTGGAC CTGTACGCCC GCAAGGTCGT GGGCTGGGCG
ATGGCGCCGA CGATGCATGC CGAGTTGGTG TGCGCAGCGC TGCAACTGGC CATTGCGCAG
CGCCAACCCG CGCCAGGGCT GATTGTTCAT TCCGACCGAG GCAGCCAGTA CGCCAGCGCG
TTGCATCAGG CGCTGCTGGC GCGCCACGGC CTGGTCGGCA GCATGAGCCG CAAGGGCAAC
TGCTGGGACA ACGCGGTGAT GGAACGCTTC TTCCTGAGCC TCAAGACCGA GCGGGTCTGG
CAGCGCGACT ACGCCAACCA TGCCGAGGCC ATGACCGACA TCGCCGACTA CATCGTGGGC
TTCTACAACA GCGTGCGGCT GCACTCCAAA CTGGGCAACC TGCCACCCAA TGCCTTCGAG
CAGCAATCGG CAATCAAACA ACCTATCGTG GTGTCCGAAA AAACTTGA
|
|---|
| Protein sequence | MSYQFVEQLH KKAVTVERLC RVLGVSRSGY YGARQRAKLA PKACLVSTQL KAEFAASGRV
YGSRRLCAVL RARGLGIGRH RVRRLMRENR LRALWRRKFM HTTDSGHALP VSDNLLARRF
NPSRPNQAWV SDITYIRTRS GWLYLAVVLD LYARKVVGWA MAPTMHAELV CAALQLAIAQ
RQPAPGLIVH SDRGSQYASA LHQALLARHG LVGSMSRKGN CWDNAVMERF FLSLKTERVW
QRDYANHAEA MTDIADYIVG FYNSVRLHSK LGNLPPNAFE QQSAIKQPIV VSEKT
|
|---|
| |