Gene Lcho_3125 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3125 
Symbol 
ID6164066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3453526 
End bp3453996 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content52% 
IMG OID641665900 
Productpyridoxamine 5'-phosphate oxidase-related FMN-binding 
Protein accessionYP_001792150 
Protein GI171059801 
COG category[R] General function prediction only 
COG ID[COG3576] Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones76 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCTCCT CTGAAGTCCT GGATTACGCC AGTCGCAGCG TGCTGTGCTG GCTTGCCACC 
GTCGACGAAA CGGGTCAGCC GAACGTCTCC CCGAAGGAGA TATTTACTCC CTTTGATTCT 
CAGTACATCG TAGTTGCAAA CCTTGCATCG CCAACGAGTG CACGCAACAT CGAAGTCAAT 
CCTCGTGTTT GCATCAGCTT CGTCGATATC TTTGTTCAAA AAGGATTCAA GGTCATCGGT 
GCCGCGCGGA ATATAAGAAG ATCCGACGCC GATTTCTCTA AATGGTCTAC CCCGCTGGAA 
GCTATGGCCG GTGCGAAGTT TCCTATTCGC TCCGTCTTCG TCATTCAGGC TGTCTCAGTG 
GAGCCAATCA TCGCCCCGAG TTATCGCCTC TATGCCACCG AAACAACAGA GAAATCGCAG 
GTAGCGTCTG CTATGCAAAC GTATGGCGTT CAGAGGAGCG GCGATGTCTA A
 
Protein sequence
MLSSEVLDYA SRSVLCWLAT VDETGQPNVS PKEIFTPFDS QYIVVANLAS PTSARNIEVN 
PRVCISFVDI FVQKGFKVIG AARNIRRSDA DFSKWSTPLE AMAGAKFPIR SVFVIQAVSV 
EPIIAPSYRL YATETTEKSQ VASAMQTYGV QRSGDV