| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3113 |
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| Symbol | |
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| ID | 6164068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3444712 |
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| End bp | 3445644 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665888 |
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| Product | YVTN beta-propeller repeat-containing protein |
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| Protein accession | YP_001792138 |
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| Protein GI | 171059789 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3391] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 67 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGC CCGCTGCGGC CGCACCGTTT GCCTACGTCA CCAACCAGGG CAGCCACGAC
GTCAGCGTGA TCGACCTGGC CGACCCGCGC ACCATCGCCC GCGTACCGGT GGGTCAATCG
CCGGCCGGCG TGGTGGCAGC CAGCGCGCGC GGCGAGGTGT TCGTGGCCAA CGCGGCGGGC
AATAGCATCT CGGTGATCGA CATGCGCAGC CAGCAGGTGG TCGACACCTT CGCGGCCGGC
CAGGGTGCCG TCGGGCTGGA TGCCAGCGCC GATGGCCGGC GGCTGTTCGT GGTCGACTGG
TACGGCGCTG CGCTGCGGGT GTTCGATGCC AGCACGCGCC GCCAGATCGC CCACGTGCCG
CTGGGCCCGG CCCCGGCCGG CGTGGCGGCC TTGCCCGACG GCAGCGCGGC CTGGGTGGCC
GAACGCGACG ACGACCGCGT CGCCCTGATC GACGTCGCCC GCGCGCAGGT GGTGGCACGC
GTGGCGGTGG GCAGCCACCC GTTCGCGCTG CTGCTCGACA GCGCGCGCGA GCGGCTCTAC
GCGCTCAACG TGCAGAGCGA CAGCGTCTCG GTGATCGATA CCCGCAGCCG CCAGGTGATC
GCCACGCTGC CGACCGGTCG CGCCCCGTAC GGCGCCGTGC TGGCCGATGG CGCACGGCTG
CTCTACGTCA CCAACCAGCA CGACGACAGC GTCAGCGTGT TCGATGCCCA GAGCCTGAAA
CCGCTGCGCA CGCTGGGCGG TTTCGGCTAC CCCGAAGGCA TCGCGGCCAG CGGCGAGCGG
GTCTACGTCG TCAACTGGAT GGACGACCAG CTGAGCGTGC TTGACGCCGC CAGCGGCCGG
CTGCTGGCCA CGCTCGCCAC CGGCCGCAAC CCGCGCGGTT TCGGCGCCTT CATCGGCACA
CCCCCACCCC ACCCACGGAG CCCTGACGAA TGA
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| Protein sequence | MSQPAAAAPF AYVTNQGSHD VSVIDLADPR TIARVPVGQS PAGVVAASAR GEVFVANAAG
NSISVIDMRS QQVVDTFAAG QGAVGLDASA DGRRLFVVDW YGAALRVFDA STRRQIAHVP
LGPAPAGVAA LPDGSAAWVA ERDDDRVALI DVARAQVVAR VAVGSHPFAL LLDSARERLY
ALNVQSDSVS VIDTRSRQVI ATLPTGRAPY GAVLADGARL LYVTNQHDDS VSVFDAQSLK
PLRTLGGFGY PEGIAASGER VYVVNWMDDQ LSVLDAASGR LLATLATGRN PRGFGAFIGT
PPPHPRSPDE
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