Gene Lcho_3100 details

Gene Information

• Locus tag: Lcho_3100
• ID: 6161709
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3432135
• End bp: 3432545
• Gene Length: 411 bp
• Protein Length: 136 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 641665875
• Product: hypothetical protein
• Protein accession: YP_001792125
• Protein GI: 171059776
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 71
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGACTGC GTCAACAAGG CTTCACGATG ATCGAACTGA TCGTCGTCAT CGTCATCCTC 
GGCGTGCTCG CCGCCACGGC ATTGCCGAAG TTCATCGACA TGCGTGGGGA TGCCGAAGGG 
GCTGCCGTCA AGGGCATGGC CGGTGCCGCC GCTGCGGCGA TGAACCTGAA CTACAGCGGC 
TGCGCGCTGA CCAACAACGC CGTCACCGCC GGCAAGTGCG TGGCCGTCGA CGCCTGCAGC 
GACGTGAGCT CGCTGATGCA AGGTGGCCTG GACGCAGCAT ATGCCGCCGC ACCAGCCGCC 
AGCGGCGTCG ACATCGGCAC CACCAACGGC GCCACCGCGA CCTGCCAGAT CAGCAAGGGC 
ACCTACAGTG CGACCTTCGT GGGCGTCGCC GCCGGCAACG CCACCCCCTG A 

 

Protein sequence

MRLRQQGFTM IELIVVIVIL GVLAATALPK FIDMRGDAEG AAVKGMAGAA AAAMNLNYSG 
CALTNNAVTA GKCVAVDACS DVSSLMQGGL DAAYAAAPAA SGVDIGTTNG ATATCQISKG 
TYSATFVGVA AGNATP