| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3097 |
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| Symbol | |
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| ID | 6162698 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3428878 |
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| End bp | 3430614 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641665872 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001792122 |
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| Protein GI | 171059773 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCGCC CCGAACGTGT CCGCCTCGGT GACCTGCTGG TCACGCAAGG CCTGATCAGC
GCCGACCAGC TCACGCAGGC CCTGGCCGCG CAGAAGACCA GCGGGCGCAA GCTCGGCCGC
GTCTTCATCG ACAACGGCTG GGTCAGCGAG ATCCAGATCG CGCAGGCGCT GGCCGGGCAG
CTGCGCGTGC CGTTCATCGA CCTCGGCCAA CGCTCGGTGC GCACCGAGGT CGCGCGCCTG
CTGCCCGAGG TACAGGCGCG CCGCCTGCGC GCGCTGGTGC TCGAAGAAAC CCCCGCCGGC
GTGCGCGTGG GCATGGCCGA CCCGACCGAC ATCGCCGCCT ACGACGAGGT CAGCCGGCTC
GTCAGACGCG AGATCGCGCT GGTGGTGGTG GCTGAGAGCC AGCTGCTCGG CGCGATCGAC
CGCAGCTACC GCCACACCGA AGAGATCGCC GGCCTGGCCA AGGAGCTGAC CAGCGAGCTG
ACCAGCGTCG AGGTCGGACT CGGCCTGGCG GGCAATCTGG GCAACCTCGG CGATCTGCTC
GGCATGGCCA GCAGCAGCGC CGAAGACGCG CCGGTGGTGC GGCTGCTGTT TTCGGTGTTC
GAAGAAGCCC TGCGTGTGCG GGCGTCGGAC ATCCACATCG AGCCGCAGGC CGGCTCGCTG
CGCATCCGCT TTCGCATCGA CGGCGTGCTG CACGTGCAGA CCGAAGCCGA CGCCAAGATC
GCCGCCGCGG TGGCGCTGCG CCTGAAGCTG ATGTCGGGCC TGGACATCTC CGAAAAGCGC
CTGCCGCAGG ACGGCCGCTT TGCCGTCAAC CTGCGCACCG GCGCGGTCGA CGTGCGGATC
TCGACCATGC CCACGCAACA CGGCGAATCG GTCGTGATGC GGCTGCTCAA TCAAGGCACC
GGCCTGCTGT CGATCGACGG CATGAACCTG CCGCCGCGGG TGGCCGCGGC GCTGCGCCGC
GCCATCGCCA AACCGAGCGG CATGGTGCTC GTCACCGGCC CGACCGGCAG CGGCAAGACC
ACCACGCTGT ACGCGGCGCT GAATGCGCTC AACAACAGCG AGCGCAAGAT CATCACGGTC
GAGGACCCGG TCGAATACCG CCTAGCCGGC CTGAATCAGG TGCAGGTGCA CGAGAAGATC
GACCTCAGCT TCAGCCGCGT GCTGCGCGCC GCCTTGCGGC AGGACCCGGA CGTGATCCTG
GTGGGCGAGA TGCGCGACCA GACCACCGCC GAGATCGGCC TGCGCGCCGC GCTGACCGGC
CACCTGGTGC TGTCGACGCT GCACACCAAC GACGCGCTGT CCACGCCGAT CCGCCTGATC
GACATGGGCG TGCCGCGCTA CATGGTGGCG CTGTCGCTGC AGATGGTGCT GGCGCAGCGG
CTGCTGCGGG TGATCTGCCC GCATTGCGCC GAGCCGCACG AGCCCGATGC CCACGAGCTG
GCCTGGCTGC AGGCCAACGG CAGCGGCGCG CCCGACCTCG CCACGCTGCG CCACGGCCGC
GGCTGCAACG AATGCAACCA CACCGGCTAC AGCGGCCGCA CCGGCGTCTA CGAGTTCATC
GAGATGACGC AGGAGCTGGT CGAGGCCATC AACCACGGCG ACCCGGCGCA GTTCGTGGCC
GCCGGGCGCC GCCAGATGGC CGGCCACACG CTGGCGCGCG ACGCCGCCGC GCTGGTGCTG
GCCGGGCGCA CCACGGTGAA CGAAGCCATG CGGATCAGCC ATCAACTCGC CGAATGA
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| Protein sequence | MARPERVRLG DLLVTQGLIS ADQLTQALAA QKTSGRKLGR VFIDNGWVSE IQIAQALAGQ
LRVPFIDLGQ RSVRTEVARL LPEVQARRLR ALVLEETPAG VRVGMADPTD IAAYDEVSRL
VRREIALVVV AESQLLGAID RSYRHTEEIA GLAKELTSEL TSVEVGLGLA GNLGNLGDLL
GMASSSAEDA PVVRLLFSVF EEALRVRASD IHIEPQAGSL RIRFRIDGVL HVQTEADAKI
AAAVALRLKL MSGLDISEKR LPQDGRFAVN LRTGAVDVRI STMPTQHGES VVMRLLNQGT
GLLSIDGMNL PPRVAAALRR AIAKPSGMVL VTGPTGSGKT TTLYAALNAL NNSERKIITV
EDPVEYRLAG LNQVQVHEKI DLSFSRVLRA ALRQDPDVIL VGEMRDQTTA EIGLRAALTG
HLVLSTLHTN DALSTPIRLI DMGVPRYMVA LSLQMVLAQR LLRVICPHCA EPHEPDAHEL
AWLQANGSGA PDLATLRHGR GCNECNHTGY SGRTGVYEFI EMTQELVEAI NHGDPAQFVA
AGRRQMAGHT LARDAAALVL AGRTTVNEAM RISHQLAE
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