| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3089 |
|---|
| Symbol | |
|---|
| ID | 6163477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3420762 |
|---|
| End bp | 3421598 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641665864 |
|---|
| Product | LytTR family two component transcriptional regulator |
|---|
| Protein accession | YP_001792114 |
|---|
| Protein GI | 171059765 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGCG ACGACGTGCG GCCGCTGGCG CCGCTGCGGG TGGCGATCGT CGACGACGAG
GAACTCGCCC GCCTGCGCCT GCGCACGCTG CTGGGTGACT GCGTGGCGCC CGCCGCGCAG
GTGGTGGCCG AACTGGCCAG CGCCGCTGCC ACCTTGCAGT GGCTGGCCCA GCAGCGCTGC
GACGTGCTGC TGCTCGACAT CCGCATGCCC GGCCTCGACG GCCTGCAGCT GGCGCAGCGC
CTGCGCGGCC TGCCGCAGGC GCCGGCGGTG GTGTTCGTCA CCGCGCACGC CGAACACGCG
CTGGCGGCGT TCGACGTGCA GGCGGTCGAC TACCTGACCA AGCCGGTGCG GCGCGCCCGT
CTGCAGGAGG CGCTGGCGCG GGTGGCCCAG CGCATCGGCT CGCGCGCGGC ACCCGAGCCG
TCAACCCGGC CGCCCGTTGC TCCCCCGGCG CTGGCCGACG ATCAGGTGAT CGTCGTGCAC
GAGCGCGGCG AGCGCGTGCG CGTGCCGCTG GCCGAGGTGC TGTACCTGAA GGCCGAGCTG
AAGTACGTGA CGCTGCGCAC CGCCGCGCGC ATCTACCTGC TCGACGACTC GCTGGCCGAT
CTGGCCGAGC GGCTCGGCAC GCGCCTGCTG CGGGTGCACC GCAACGCGCT GGTGGCGGTG
TCGGCGGTGC GCGCGCTCGA GCGCCACCCG TTCACCGACG CGGCCGATGC ACTCGACGCC
GACGACCGCA ACGGCGCCTG GGCCTGGGCC GTGCACATCG GCGCCACCGA CGAGTGGCTG
GCGATCTCGC GCCGCCAGCT CGCGCTGGTG CGCAGCGTGC TGTCGGCGGC CGACTGA
|
|---|
| Protein sequence | MAGDDVRPLA PLRVAIVDDE ELARLRLRTL LGDCVAPAAQ VVAELASAAA TLQWLAQQRC
DVLLLDIRMP GLDGLQLAQR LRGLPQAPAV VFVTAHAEHA LAAFDVQAVD YLTKPVRRAR
LQEALARVAQ RIGSRAAPEP STRPPVAPPA LADDQVIVVH ERGERVRVPL AEVLYLKAEL
KYVTLRTAAR IYLLDDSLAD LAERLGTRLL RVHRNALVAV SAVRALERHP FTDAADALDA
DDRNGAWAWA VHIGATDEWL AISRRQLALV RSVLSAAD
|
|---|
| |