| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3079 |
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| Symbol | |
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| ID | 6160471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3409045 |
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| End bp | 3410055 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641665854 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_001792104 |
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| Protein GI | 171059755 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATAC TCATCACGGG CGCGGCCGGT TTCATCGGCA TGCACACGGC CCAACGCCTG
ATCGCCGACG GACATCAGGT GGTCGGCATC GACAACCTCA ACGACTACTA CGACGTCCAG
CTCAAGCGCG ATCGCCTGGC CCGGCTGGCC GAGCTGCCGG GTTTCACCTT CGTGCAGGTC
GACGTGGCCG ACCGCGACGC GCTGATGGCG CTGTTCGATG CCCATGCGGT CACGCGGGTC
GTGCACCTGG CGGCACAGGC GGGGGTGCGT TATTCGATCA CCAACCCGCA CGCCTACGGC
GAGGCCAATC TGGTCGGCTT CCTGAACATG CTCGAGGCCT GCCGGCAGCA CCGCATCGAA
CACCTGGTCT ATGCGAGCAG TTCGAGCGTC TACGGCGGCA ACCGCAAGAT GCCGTTCTCG
GAAGGTGACT CGGTGGATCA CCCGGTGAGC CTGTACGCCG CCACCAAGAA GGCCAACGAG
CTGATGGCGC ATGCCTACAG CCATCTCTAC GCCATCCCGA CCACGGGCCT GCGCTTCTTC
ACGGTCTACG GCCCGTGGGG CCGGCCTGAC ATGGCCTACT TCTCGTTCAC CAAGGCGATC
GTCGAAGGCC GGCCGATCCA GGTGTTCAAC AACGGCGACA TGCTGCGCGA CTTCACCTAC
ATCGATGACA TCGTCGACGG CGTCGTGGCC ACCTTGTATC GGCCCGCCAC TGCCGATGCG
GCATTCGATC CGTTGCTGCC GCACCCGGGG CGGGCTCAGA AGCCGTTCCG TGTCTTCAAC
ATCGGCAATC AGGATCCGGT GGCGCTCGGC GATTTCATCG CCGCCATCGA AGCGGCCGTC
GGCAAGTCGG CGATCAAGGA GATGTTGCCG ATGCAGCCGG GCGACGTTCA GGCGACCTAT
GCCGACGTGT CGGCGCTGGC CGAATGGACC GGCGTGCAGC CGAAGACATC GATCCGGACT
GGCATCGACC GTTTTGTCGC CTGGTACAAG GCCTACTACC GCGTCACCTG A
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| Protein sequence | MKILITGAAG FIGMHTAQRL IADGHQVVGI DNLNDYYDVQ LKRDRLARLA ELPGFTFVQV
DVADRDALMA LFDAHAVTRV VHLAAQAGVR YSITNPHAYG EANLVGFLNM LEACRQHRIE
HLVYASSSSV YGGNRKMPFS EGDSVDHPVS LYAATKKANE LMAHAYSHLY AIPTTGLRFF
TVYGPWGRPD MAYFSFTKAI VEGRPIQVFN NGDMLRDFTY IDDIVDGVVA TLYRPATADA
AFDPLLPHPG RAQKPFRVFN IGNQDPVALG DFIAAIEAAV GKSAIKEMLP MQPGDVQATY
ADVSALAEWT GVQPKTSIRT GIDRFVAWYK AYYRVT
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