Gene Lcho_3076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3076 
Symbol 
ID6162639 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3405272 
End bp3406048 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content67% 
IMG OID641665851 
Productpolysaccharide deacetylase 
Protein accessionYP_001792101 
Protein GI171059752 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATCACG GCCTCTACGC CAACGAGCGG GAATACCAGG CCATCGATGC GGCCGATCGC 
CCCTACGCCG TATCGACCCA GCGGTTCACC GAACAGCTGC AAGCCATGCA GCGCAGCAGG
CTGAACATCA TCGATCCCGG CCAGCTCGGC AGCCCGGCGA TGTCGGCGGG CGGTGTCGTG
CTCACCTTCG ACGACGGCCA CGCCAGCAAC CATCGGCATG CCCTGCCGAT CCTGCAGCAG
CTCGGCTTGA AGGCGGTGTT CTTCGTCACC TCCGATTTCA TGGAGCGACG CCCCGGCTTC
TGCAGCTGGG CGCAACTGCG CGAGATGGCC GATCAGGGCA TGACCATCGG CTCGCACGGC
CGAACGCACC GCTTTCTCGA CGATCTCTCC GATGCCGAGG CGATGGCCGA ACTGTCCGAT
TCGAAACAGG CCATCGAGCA GGGCATCGGG CGCGGCATCG ACCAGGTGTC GTTCCCCGGC
GGGCGTTTCA GTGTGCGGCA GCTGGCCTTG TGGCAACCGC TCGGCTATCG CGCATTCCAC
TCCTCGCGCG TGGCGGCCGC CCCGGCGCGC CCCGTGCAGC CGGGCGACGT CCTGCCGCGG
CTCGCGATCC GCCGTGACAC CTCGCTGCCG GACGTGCTTG CGATGGCTCA GGCCGATCGC
CGCTGGTTGA TGCGCGCGAC CGCGCTCGCG TCGGCCAAAC AACTGGTGCG CCGGCTTGCG
GGCAATCGCC TTTATCACCA CCTGTATGAA CGACTTCATC CCCAGACGCG TGGCTGA
 
Protein sequence
MYHGLYANER EYQAIDAADR PYAVSTQRFT EQLQAMQRSR LNIIDPGQLG SPAMSAGGVV 
LTFDDGHASN HRHALPILQQ LGLKAVFFVT SDFMERRPGF CSWAQLREMA DQGMTIGSHG
RTHRFLDDLS DAEAMAELSD SKQAIEQGIG RGIDQVSFPG GRFSVRQLAL WQPLGYRAFH
SSRVAAAPAR PVQPGDVLPR LAIRRDTSLP DVLAMAQADR RWLMRATALA SAKQLVRRLA
GNRLYHHLYE RLHPQTRG