| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3066 |
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| Symbol | |
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| ID | 6162721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3392603 |
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| End bp | 3393961 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665841 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001792091 |
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| Protein GI | 171059742 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCCCA CTCCTCCCGC GCTCGACTCC CTGCTGGCCG CCCTGACCAA GCCGGCCGCC
CTGATCGAAC TGGGCGTTCT GGCAACCGTG TTGGCCGTCA CCGCCGTGCT GGTGTACGTG
ATGCGCTCCG TGGCCCGCAG CGTTCGCGCC GAAGCCGGCC GCACCGCGCC GCTGGCCTCG
ATCTGGTTCG GCGACTACCT CGTCGACGGC GTGCTGTTCC CGAGCCTGGC GCTCGCGCTG
GCCTATCTGG CGCGCCAGGT GCTGTTCCTG CAGGGCTGGC CGCTGGCGGT GTTCAAGCTG
GCAATCCCGG TGCTGCTGTC GCTGGCGCTG ATTCGCCTGA GCGTGCGGGT GCTGACGGTG
GCGTTCCCGC ATTCGCTGTT CATGCGGGTG GCCGAACGCA CGATCTCCTG GCTGGCCTGG
GGCGCGCTGG TGCTGTGGCT GACGGGCGTG TTGCCGGCGT TCATGGACGG GCTCGACGAG
ATCAGCTGGA AGCTTGGCGC CAAGCCGGTG ACGCTGCGCA CCCTCATCGA AGGCACGCTG
TCGGCCGGTT TCGTGCTGAT GCTGGCCCTG TGGGTCTCGG CGGCGCTCGA GGCCCGTCTG
CTCGACGGCG TGCAGGGCGG CCAGCTCTCG CTGCGCAAGG CGGCGGCCAA TGCATTGCGG
GCTTTCCTGA TGTTCGTCGG CCTGCTGGTG GCGCTGAGTG CGGTCGGCAT CGACCTCACC
GCGCTCGGCG TGCTCGGCGG CGCGCTGGGC GTCGGCATCG GCTTCGGCCT GCAGAAGCTG
GCGGCCAACT ACGTCTCGGG GTTCGTGATC CTGGCCGAGC GCTCGCTGCG CATCGGCGAC
CTGGTGCAGG TGGCCGATTT CGAGGGCCGC ATCACCGACA TCACCACCCG CTACACCGTG
ATCCGTGCCG GCAACGGGCG CGAGGCCATC GTGCCCAACG AAACGCTGAT CACCACCACG
GTGCAGAATC TGTCGCTGGG CGATTCCCGC CTGCTGCTGA CGACCCGGGT CAGCGTGGCC
TACGGCACCG ACGTCGCCGC GCTGTGCGAG CGCATCTGCA CGACGGTCGG ATCGATCGGA
CGCGTGCTGC CCGATCCGGC ACCTACCGCG CACTTCGTCG CCTTCGGTGC CGATGGCCTC
GATCTGAAGA TCACGTTCTG GATCGCCGAC CCCGACCAGG GCCAGGGCAA CGTGCTGTCG
GAGGTGAATC TGGCGATCCT GGCCCTCCTC GACCGCGACG GGATCGAGAT TCCCTATCCG
CAGCGGGTGC TGCGCATCCT GCGAGAAACA CCGGCCGCGG CGCCAAGGCT GGCGGCCGGA
TCGAACGAAG CGCTGACGGA TACGAACGCC AGCGGCTGA
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| Protein sequence | MLPTPPALDS LLAALTKPAA LIELGVLATV LAVTAVLVYV MRSVARSVRA EAGRTAPLAS
IWFGDYLVDG VLFPSLALAL AYLARQVLFL QGWPLAVFKL AIPVLLSLAL IRLSVRVLTV
AFPHSLFMRV AERTISWLAW GALVLWLTGV LPAFMDGLDE ISWKLGAKPV TLRTLIEGTL
SAGFVLMLAL WVSAALEARL LDGVQGGQLS LRKAAANALR AFLMFVGLLV ALSAVGIDLT
ALGVLGGALG VGIGFGLQKL AANYVSGFVI LAERSLRIGD LVQVADFEGR ITDITTRYTV
IRAGNGREAI VPNETLITTT VQNLSLGDSR LLLTTRVSVA YGTDVAALCE RICTTVGSIG
RVLPDPAPTA HFVAFGADGL DLKITFWIAD PDQGQGNVLS EVNLAILALL DRDGIEIPYP
QRVLRILRET PAAAPRLAAG SNEALTDTNA SG
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