Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3065 |
Symbol | |
ID | 6162720 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3391075 |
End bp | 3392601 |
Gene Length | 1527 bp |
Protein Length | 508 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641665840 |
Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
Protein accession | YP_001792090 |
Protein GI | 171059741 |
COG category | [C] Energy production and conversion |
COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.998246 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACCA CCATCCGCCA GGCCGACCTG ATCGAAAGCG TCGCCGCCGC CCTGCAGTAC ATCAGCTACT ACCACCCGGC CGACTACATC GCCCACCTGG CGCGCGCCTA CGAGCGCGAG GCCTCGCCGG CCGCCAAGGA TGCGATCGCG CAGATCCTGA CCAACTCGAA GATGTGCGCC GAAGGCCATC GGCCGATCTG CCAGGACACC GGCATCGTCA ACGTGTTCCT GAAGATCGGC ATGGACGTCA AGTGGGAGGG TTTCACCGGC TCGATCGCCG ACGCTGTCAA CGCCGGCGTG CGCCAGGGTT ACCTGAACCC CGACAACGTG CTGCGCGCCT CGGTGCTCGA CGATCCGATC TTTGCCCGCA AGAACACCAA GGACAACACG CCGGCCGTGA TCCACATGGA GCTGGTGCCG GGCAACACGG TCGACGTGAT CGTGGCGGCC AAGGGCGGTG GCAGCGAGAA CAAGTCGAAG ATGTACATGC TCAACCCGAG CGACAACATC GTCGACTGGG TGCTCAAGAC CGTGCCGACG ATGGGCGCGG GCTGGTGTCC GCCGGGCATG CTGGGCATCG GCGTGGGCGG TACGGCCGAG AAGGCCGTGA TGATGGCCAA GGAAGCGTTG ATGGAAGACA TCGACATGTA CGAGCTTCTG GAACGCGGCC CGCAGAACAA GCTCGAAGAG CTGCGCATCG AGCTGTACGA GAAGGTCAAC GCGCTGGGCA TCGGCGCCCA AGGCCTGGGC GGCCTGACCA CCGTGCTGGA CGTCAAGATC AAGACCTTCG CGACCCACGC GGCCAGCAAG CCGATCGCGA TGATCCCCAA CTGCGCCGCC ACCCGCCACG GCCACTTCGT GCTCGACGGT TCCGGCCCGG CCTACATGGA GCCGCCGAGC CTCGACCTGT GGCCCAACGT GGCCTGGGCG CCCGACTACA ACAAGAGCAA GCGCGTCGAT CTCAACACGC TGACCAAGGC CGAAGTGGCG AGCTGGAAGC CGGGCGACAC GCTGCTGCTC AACGGCAAGA TGCTGACCGG CCGCGACGCT GCCCACAAGC GCATCAACGA CATGCTGGCC AAGGGCGAGC CGCTGCCGGT GGACTTCACG AACCGCGTCA TCTACTACGT CGGCCCGGTC GATCCGGTGC GTGACGAGGT CGTCGGCCCG GCCGGCCCGA CCACCGCCAC CCGCATGGAC GGCTTCACCC GCATGATGCT GGAGAAGACC GGCCTGATCT CGATGGTCGG CAAGGCCGAG CGCGGCCCGG TGGCGATCCA GGCGATCAAG GACAACCAGA GCGCGTACCT GATGGCCGTG GGCGGCGCCG CCTACCTGGT CGCCAAGGCG ATCAAGGGCG CGAAGGTCGT CGGCTTTGCC GACCTCGGCA TGGAAGCGAT CTACGAGTTC GACGTCAAGG ACATGCCGGT GACGGTGGCG GTCGACGCCA GCGGCACCAG CGTGCACAAC ACCGGGCCGA AGGAATGGCA GGCCCGCATC GGCAAGATCC CGGTCGTCGA AGCCTGA
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Protein sequence | MTTTIRQADL IESVAAALQY ISYYHPADYI AHLARAYERE ASPAAKDAIA QILTNSKMCA EGHRPICQDT GIVNVFLKIG MDVKWEGFTG SIADAVNAGV RQGYLNPDNV LRASVLDDPI FARKNTKDNT PAVIHMELVP GNTVDVIVAA KGGGSENKSK MYMLNPSDNI VDWVLKTVPT MGAGWCPPGM LGIGVGGTAE KAVMMAKEAL MEDIDMYELL ERGPQNKLEE LRIELYEKVN ALGIGAQGLG GLTTVLDVKI KTFATHAASK PIAMIPNCAA TRHGHFVLDG SGPAYMEPPS LDLWPNVAWA PDYNKSKRVD LNTLTKAEVA SWKPGDTLLL NGKMLTGRDA AHKRINDMLA KGEPLPVDFT NRVIYYVGPV DPVRDEVVGP AGPTTATRMD GFTRMMLEKT GLISMVGKAE RGPVAIQAIK DNQSAYLMAV GGAAYLVAKA IKGAKVVGFA DLGMEAIYEF DVKDMPVTVA VDASGTSVHN TGPKEWQARI GKIPVVEA
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