| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3055 |
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| Symbol | |
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| ID | 6163672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3380811 |
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| End bp | 3382415 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665830 |
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| Product | OmpA/MotB domain-containing protein |
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| Protein accession | YP_001792080 |
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| Protein GI | 171059731 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.000611511 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACACA GCACCCACAC CCGCCCGTCG CCGGGGACCG GCACGGCCGC CCAGGGCGGC
GTCAAGGCCA GCACGAAGGG CCGTGTGAAA AGTGCCGGCA TGCCGCGCTA CGTCACCACC
CACCTCCCGC TGCCGTCCAA CCCGGCAGCC GAACGCGAGG CGCAGGCCCG CGCGCAGGCG
CCCGATCAGG CGGCGGCCCA CGCGTCGGGC CCCGGCGGTG CGCCGTCGGC GGCGGTGCAG
ACCACGCCGC TGGCGCGGCA GATCTCGCGC CGGATCGTCG ACCAGGCCGG CAGCGGCCAG
GCGCTGCCGG GCGGCTGGGC GCAGCAGGCT GCGGGGCTGG GGGCGCAGCC CGAGCAGGTG
CGCGTGCACG CCGACAGCGC GGCGCAGCGG CTGACGGCGT CGATGGGCGC CAACGCGGTC
ACGGTCGGGC GCGACATCTT CTTCGCCCCC GGCCGCTACG CACCCGACAC CCACAGCGGC
GGCGCGCTGC TGCGCCACGA ACTCACCCAC GTCGGCCAGC AGGGCGGCGA ACCCGTCGCG
CCGCAGTGCG ACCTGACGAC GCCCCAGCCG ACCGACATGG GCATCTTCAA CATGGCCATG
ATCACGCAGG CGGCGCCGCC CGGCCTGATG GGCACGATCA GCTTCATGCC CGACACCGAC
GGGCCGTATT CGGCCGAGAT CGGCCTGGTG CAGGCGATCA ACATCACCGA CGTGCCGGGC
ACTTCGACGG GCACGCCCAA CACGCCGGTG GACTGGCGCA ACATCACCGA CTCCAACAGC
ATCACCCCCG CCAATCCGGC CGGCACCGTG GGCACCGAGG GCGGCCGCAT GGACCTGATG
ACCACCGGCA CCGACGGCGC ACCGGCGGGC ACCTACATCG ACTCGATGAC CGCCAACAAC
CCGCGCGGCA GTGCGATCGG GCCCAACTAC GTCGAGCACT TCGGCAACTC GCAGCAGTTC
GGCTGGCTGC GCTCGGACAC CGACGTCGGC CCGGCCCAGC TGTGGGACTA CCCGAACTTC
AGCTTCGACA CCAACTTCGA CTTCGAGACC GTCGCAAAGG GCACCGACAA CCAGGTGGTG
TACGGCGCGC TCGAATGGGG CTTCCAGATC CGCTCGGGTG CGGTGGTGGC GACCTCCGAA
TACGCACGCG CCGGCAACGA CACCTCGGCC ACCTTCGACG AGGCGCTGGA GCGTTTCAGG
GGCTACTTCA CGCACGAGCC GATCGTCATC TACTTCGACA CCGGCTCGGA CCAGCCGATG
GCCGGCGAGG AGGCCAAGCT CGACGGCATC CAGGAGTACC TCGACAACTA CCCCGACGCG
ACGCTGGGCA TCGACGGCTT TGCCGACATC CGTGGCTCGG AGCAGTTCAA TTTCAGGCTG
TCGGACCAGC GCGCACAGAC CGTGCAGGCG CTGGTGCTGG CCGAGGGCAT CGCCGCCGGG
CGCATCGACT GGGCGGTGGG GGTGGGCGAG ACGCAGGACT TCTCGCAGCA CGGCACCGCG
CCGGGCACGG CCCAGCCGGT CGACGCCGGG CGGCTGCGGG CGAACCGGCG GGTGGTGATC
AGCTTCAACC GATCCAGCAG CACCGCGCCG ATCGTGGTGC CGTGA
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| Protein sequence | MKHSTHTRPS PGTGTAAQGG VKASTKGRVK SAGMPRYVTT HLPLPSNPAA EREAQARAQA
PDQAAAHASG PGGAPSAAVQ TTPLARQISR RIVDQAGSGQ ALPGGWAQQA AGLGAQPEQV
RVHADSAAQR LTASMGANAV TVGRDIFFAP GRYAPDTHSG GALLRHELTH VGQQGGEPVA
PQCDLTTPQP TDMGIFNMAM ITQAAPPGLM GTISFMPDTD GPYSAEIGLV QAINITDVPG
TSTGTPNTPV DWRNITDSNS ITPANPAGTV GTEGGRMDLM TTGTDGAPAG TYIDSMTANN
PRGSAIGPNY VEHFGNSQQF GWLRSDTDVG PAQLWDYPNF SFDTNFDFET VAKGTDNQVV
YGALEWGFQI RSGAVVATSE YARAGNDTSA TFDEALERFR GYFTHEPIVI YFDTGSDQPM
AGEEAKLDGI QEYLDNYPDA TLGIDGFADI RGSEQFNFRL SDQRAQTVQA LVLAEGIAAG
RIDWAVGVGE TQDFSQHGTA PGTAQPVDAG RLRANRRVVI SFNRSSSTAP IVVP
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