Gene Lcho_3052 details

Gene Information

• Locus tag: Lcho_3052
• ID: 6163669
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3372032
• End bp: 3377014
• Gene Length: 4983 bp
• Protein Length: 1660 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641665827
• Product: hypothetical protein
• Protein accession: YP_001792077
• Protein GI: 171059728

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 0.000632235
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

GTGAGCAAGC GAAGCAACAC TCCGATCACC CAGCCCTTGC CGGGCGAGCG GGTGATCGCG 
CTGTCACCGC AAAACGCCGA AGAGGCGGCC CTGACCTGGC AGCACCGCCC GAACATCTTC 
GCCGGCCGCG CGCTGACCGC CGGCACGCTC GACCAGCGCC AGCAATGGCA GGCCGGCCAC 
ATCGCTACCC GCGGCCAGTC GCTGGTGGCG GGCATCGACG ACGGCCTGCA ACTCGACATC 
GGCCCGGACG GCGGCGCCTC GCTGGCCGAC GCCACGCTGC ACATCGAGGC AGGCCGTGCG 
CTGACGGTCA GCGGCGAGGA CGTGGTGCTG ACCCGCACCC TCGAATGCCG CCTGGCCGAC 
GTGCCGGTGG TGGCGCCGCC GGGGTTCTTC GTCGATGGCA GCGGCGTGGG TGACAGCAGC 
GGCGACGGCA CCGTGCTGGC GCGCCGGGTC GGCCTGACGC TCGGCACCCT GCCCGCCGCG 
GCGCTGGCCA CGCTGCCGGC GATCGGCATC CTGCTGCTGC AGCCGGCGCT GGTCGACCGC 
AGCAACTTCG ATCCGCTCGA CCCCTGCGAC CGCAGCGCCT GCGCCGATGG TGCGGTCGAC 
GATGTCACCG CCTTCGAGGA CTGGCGCATC GGCGACGCGG TGCGGTTGCT CTGGTACGTC 
TGGCCGAGCG AGTGGCGCGC GCTGCCCGCC ATGCCCGATC TGCAACTGCG CAACGCGCTG 
GCCTGGACGG TGTTCGACGC CGAGGCCCGC ATGGCTGTCG GCGACTGCCT GCCGTGGGAG 
GAATGGGGCG CGCCGCTGGC GATGGTGCGG CTGGATGCCA ACCGCTTCCC GGCCTGGGCC 
GACCGCGCCA GCGTGGCGCG CCACGGCGGC ATGGCACGCG ACGCGCGGTT GCAGCTCGGC 
GTGGCCCCGC CCGCCGATGC GGACTCGACG CCCAACGGCG TCGCGCTGAT CGCCAACAGC 
CGCCTGCCGT CGTTGTGGCA GGCGCAGATC GAGCAGTTTG CCGAGCAGGT CGCCGCCGCC 
GGCAGCATCC CCGCGGGCGA TCTGGCCGAC GCCTTCGCGC GCCGCCTGCC GCCGGTCGGC 
CTGCTGCCGC GCAATGCCTA CGACCCGGCG GCGTTTCGCA GCGACTTCTT CCCGCCCGGA 
TTCGACATCG ACGCCGCGCC GGTGCCGATC GAGCAGCTCG ACATCGCCGT GCGCGCCAAC 
GCCGCGCTGG CGCCGCTCGA CCCGAGCGTG CCCGAGAGCG TGCGGCTGCT GGTGCCCGTG 
CCGCTGCAAT CGTGGGAGCC GCGTCTGCTG CTGAGCGAGG CGGTCGACCC GCTGTTCTTC 
ACCACGCTGA ACCGCTTTCT GCTCGATCGC GCCCGCGCGC TCGGCGGCCG CCAGGGCCTG 
CGCCTGCGAG ACGCCGTGCT GCAGCACGCG CTCGCCGGCA TCGACGTGAC CGTGCCCGCC 
TTCGACAACG ACGCCGCCGC GCTCGAGACT GAAACGCTGT CGCCCTGGGG CCCGCCGCCA 
GCCGGTGGCG GCCACCGCAG CGCGCTGCTG GCGGGCATGC ACCAGCACTT CTTCTTCGGC 
GCCAGCGAGA CGCTGCCGGT GCGCGAGGAC GCGCTGTTCT GCTGGGTCTA CCTCGACCCG 
ATCAACCCGC CGCGTGAGCT GATGCTGCAG TGGCACGTCG ACGGCCAGTG GGAGCAGCGC 
GCCTACTGGG GCGAGAACCT GATCGGCTGG GGCGTCGACG GCACGCCCTC GCGCCAGCGC 
ATCGGCGATC TGCCCGAGGC CGGCCGCTGG CTACGCCTGG ACGTGCCGGC GGCGCTGGTG 
GGACTGGCCG GGCGCAACGT CGACGGCATC GCCTTCACGC TGTTCGACGG CCAGGCCGCC 
TACGGTTCGA GCGGCGCGTT CAACGCCAAC GGCGAGCGGC GCTGGTTCGA CAACCCGCTG 
CCCGCGCTGG CCCGCATCGG CGGCGAGGAG CCGTGGGTGC TGCTGACGCA CAACGACCTG 
TGGACGCCGT TCGAGCCCAC CGCCGGCGTG CTGCCGGCAG TGCCCGCGGC CCTGCCGTCG 
ACGCTCGGCG GTCATTTCGA TGCGCTGGCC AGCGGCATGC ACCAGCACTT CTTCGACACC 
GTGAGCACGC CGTTCACGAT CACGGCCGGC GAGAAGCTGT TCTGCTGGGT CTGGCTCGAC 
CCCAACCACC CGCCGCGCGA GCTGATGCTG CAGTGGTTCA CCGCCAAGGA CGGCTGGGAG 
CAACGTGCCT TCTGGGGCTG GGACATGATC GGCTGGGGCG TGGCCGGCAC GCGTTCGCGG 
CTGCGCCAGG GCGCGCTGCC GGCGCCGGGC GGCTGGCTGC GGCTGGAGGT CAGCGCCGCC 
AGCCTCGGCC TCGAAGGCGC GCCGCTGCTG GGTATGGCGT TCACACAGTT CGACGGCATG 
GCGGCTTTCG GTGCGACGGG GGCGTTGACG GCGACCGGCA ACGGCGAGCG GGTCTGGTTC 
GCCGGCAGCG TGCCGCCGGG CGCGGTGCAA CGCGGCGACA CCTGGCACTT CATCGGCGCC 
GATGCGATGG CGATGCGCAG CCCGCTGCCG AGCGCGCAGA TCGGCCAGGC GCAGGCGCTC 
GCCGATCTGG CCCAGCACCC CGCGCTGCAG GTGCTGTCGG CGCAGGAGCG CGCGCAGATC 
CACCTGCTCG GCGCCGAGGG TTTCACCGCC TATCTGAAAG CACGCACCGA CCGCGCCGAC 
GACGTCGTCG ACTACGGTTT CGTCAAGGTG CAGACCGACA TCTACCGCGT GCGCCAGCTC 
GTGCTGGGCA ACACCGCGGC GACCCGGCTG GCGGTGTCGC CCACGCTGGC GGGCATCGCG 
CAATCGGAAA CCGCCACCGC CTCGCAGACG CAGATCAACA GCTTCATCGC CGACCTGAAG 
CTCGGCCAGA GTACCGCGGG TGCGTTCGCC TCGATGGCCA CCGCGCCGAA GGTGCAGGCC 
ACCGAAACCG TCTCGCTGGC CACCAGCGCC GCCACGAGCA CCGCGCCGGT CGCCAGCCGC 
GCCTTCCTGA GCAGCGGGCT GACGAGCAGC CTGTCGACCG GGCTGATCGG CAACCTCGAC 
CTGTCGGCGA TCCAGCTCGG CACGGTCAGC ACCGTCAGCT CGCCCACGCT GCTGACGAGC 
AAGGAGCTGG CGAGCACCAC CGCGATCCAG CGCCTGCCCA CCGCCAGCAT CGCGGTCAGC 
CCGTCGCCGC TGGACGTGGC GAGCGCCGCG CCGCTGGTCG GCCAGACCTT CATCCGCACC 
ACCACCATCG CCAAGCGGCT CGAAGACCCG AAGTCCAAGG AGGTGCGCGA CTACTCGACC 
TCGTCGCGTT TCGACGCCAT CAACGCGCTG GTGCGGCTGG TCGATGCGCT GAGTGCCGAG 
GACGGCGGCG CCACGCCGGG CCTGTTCGAG GGCATCGACG TGCACGGCCT GCAGGGCGAC 
GAGTTCCTGG CCGACCTGCC GGGCGAGGTC GGCCAGAAGC CGATCCGCCG GCCGTTCACC 
GACTTCATCG CCAACCGCGC CCTGCTCGGC CGGCTGATGA CAGTGCCGCT GCGTGTGGTG 
CAGGGCGACC CGGACGAGGG CGCGTTCTTC TCCGACGCCA CCGACCTGTC CGACCACGTG 
ATCGCGCTGA TGCGGCAGGT GGAGGGGCGC GTCAAGCGCT ACCGCGAGGC GCTGACGGTG 
TGCCAGCAGA CGGTCGACAG CTTGCGTGGT TCGCGTGCTG TCGTGCTGTC GGGGCTGGCG 
CGTTTTGCCG AGGATCTGGC CGAGGCGCGC CACGACGTCA GCGTGACCCG CGCGCTGCTG 
GCCGAGGAAA CCGAGCGCAT CACCGCCATC AATGCCCGGC GCGCCCAGGT GCTGGCCGAG 
CAGGTGCCGT TCATCGCCTA CGTGCGACCA CGCGAGGCCG ACAACCTGCG CGCCACGCTC 
ACGCATTCGG TCGACCCCGG CCTGCTCGAA GCGCCGGTGC CGGCCTGCCT GCGCGAGCAC 
CCGGACCTGC CCGAAGAGCT GGCCGACATG CTGCGCGTGG TGCGCGAGGC GCCGGCCAAC 
TGGTTCGTGC ACCTGCCGCC GCTGATCCGC CGGCTCGACA AGGTGGAGCC GCTGATCCGC 
ACGCTGCAGA CCGCGCAGGT GCGCGCGCTG TCGGGCATCG CATCGCCGCT GCTGTCGGCG 
GCGGGCGGCG TGGCGGTGGG CAGCGGCGGC AACACCCGGC TCGCCGCGGC GATCTCGCAG 
GTATCCACAC GCCAGGCCCA GGCGCTGGCG CCGCGGCTGG CGACGCTGCA GACGCTCAAC 
ATCACGAGCC TGCTCACCAC CACCTGGCAG GGCCTGCGCG TGCAGGCCGA GCAGGTGCTG 
TCGTTTGCCG ACGTGGCCGA AGGTGGCCAC GGCCGCAGCG ACGTGGCGCG CGCGGCGGCC 
AGCGAGCTGG AGAACATCCG CCGCATCGTG GCCTGCCTGC ACGCCGAGTT CTCGATGATC 
ACGCCGGCGC TGCGGCTGAT CTGGTCGGAG ACGCTGTCCG AGTTCGACGC CGCGCCGAAC 
CTGCGCAACC TCGCCAGCCT GCCGCGCTGG GCCGAGATCG GTTATGTCGA CCGGCGCCAG 
ATGCAGGCTT ATGTGGATTG GCTGTTCGGC CAGATCGAGC CCGGCCAGCC GCAAGCGGTG 
GCGCTGGTCA ACGACGTGGT GCGCATGTGC CTGCTGCTGG CCAGCCACGC GCCGGTCGAC 
CGCATCGTCA CGGGCAGGCT GGCGCGGCCG ATTCCCGGCG TGCGGCCTGG CATCCGCATC 
CCGCTGACGG TGCTGGAGCC GGCCAAGCTG CGCGTGGGCA TGCAGGCGGT GCTGTACCGC 
GCCGACCAGG TGGTGGCGCG CGCGGTGGTC GAGGACCTGG GGCAGCTGGA GGTGTCGGCG 
CAGGTGATCC ACACCACGGC GGCGCAGGTC GATCTGGGCG ACGACGTGCG GGTGCATTTC 
GACGACAACG CGTCGCTGAG CCTCGCCGCG GCGAGCGCAC GGCGCAGCCT GTTCGGGCGC 
TGA 

 

Protein sequence

MSKRSNTPIT QPLPGERVIA LSPQNAEEAA LTWQHRPNIF AGRALTAGTL DQRQQWQAGH 
IATRGQSLVA GIDDGLQLDI GPDGGASLAD ATLHIEAGRA LTVSGEDVVL TRTLECRLAD 
VPVVAPPGFF VDGSGVGDSS GDGTVLARRV GLTLGTLPAA ALATLPAIGI LLLQPALVDR 
SNFDPLDPCD RSACADGAVD DVTAFEDWRI GDAVRLLWYV WPSEWRALPA MPDLQLRNAL 
AWTVFDAEAR MAVGDCLPWE EWGAPLAMVR LDANRFPAWA DRASVARHGG MARDARLQLG 
VAPPADADST PNGVALIANS RLPSLWQAQI EQFAEQVAAA GSIPAGDLAD AFARRLPPVG 
LLPRNAYDPA AFRSDFFPPG FDIDAAPVPI EQLDIAVRAN AALAPLDPSV PESVRLLVPV 
PLQSWEPRLL LSEAVDPLFF TTLNRFLLDR ARALGGRQGL RLRDAVLQHA LAGIDVTVPA 
FDNDAAALET ETLSPWGPPP AGGGHRSALL AGMHQHFFFG ASETLPVRED ALFCWVYLDP 
INPPRELMLQ WHVDGQWEQR AYWGENLIGW GVDGTPSRQR IGDLPEAGRW LRLDVPAALV 
GLAGRNVDGI AFTLFDGQAA YGSSGAFNAN GERRWFDNPL PALARIGGEE PWVLLTHNDL 
WTPFEPTAGV LPAVPAALPS TLGGHFDALA SGMHQHFFDT VSTPFTITAG EKLFCWVWLD 
PNHPPRELML QWFTAKDGWE QRAFWGWDMI GWGVAGTRSR LRQGALPAPG GWLRLEVSAA 
SLGLEGAPLL GMAFTQFDGM AAFGATGALT ATGNGERVWF AGSVPPGAVQ RGDTWHFIGA 
DAMAMRSPLP SAQIGQAQAL ADLAQHPALQ VLSAQERAQI HLLGAEGFTA YLKARTDRAD 
DVVDYGFVKV QTDIYRVRQL VLGNTAATRL AVSPTLAGIA QSETATASQT QINSFIADLK 
LGQSTAGAFA SMATAPKVQA TETVSLATSA ATSTAPVASR AFLSSGLTSS LSTGLIGNLD 
LSAIQLGTVS TVSSPTLLTS KELASTTAIQ RLPTASIAVS PSPLDVASAA PLVGQTFIRT 
TTIAKRLEDP KSKEVRDYST SSRFDAINAL VRLVDALSAE DGGATPGLFE GIDVHGLQGD 
EFLADLPGEV GQKPIRRPFT DFIANRALLG RLMTVPLRVV QGDPDEGAFF SDATDLSDHV 
IALMRQVEGR VKRYREALTV CQQTVDSLRG SRAVVLSGLA RFAEDLAEAR HDVSVTRALL 
AEETERITAI NARRAQVLAE QVPFIAYVRP READNLRATL THSVDPGLLE APVPACLREH 
PDLPEELADM LRVVREAPAN WFVHLPPLIR RLDKVEPLIR TLQTAQVRAL SGIASPLLSA 
AGGVAVGSGG NTRLAAAISQ VSTRQAQALA PRLATLQTLN ITSLLTTTWQ GLRVQAEQVL 
SFADVAEGGH GRSDVARAAA SELENIRRIV ACLHAEFSMI TPALRLIWSE TLSEFDAAPN 
LRNLASLPRW AEIGYVDRRQ MQAYVDWLFG QIEPGQPQAV ALVNDVVRMC LLLASHAPVD 
RIVTGRLARP IPGVRPGIRI PLTVLEPAKL RVGMQAVLYR ADQVVARAVV EDLGQLEVSA 
QVIHTTAAQV DLGDDVRVHF DDNASLSLAA ASARRSLFGR