| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3050 |
|---|
| Symbol | |
|---|
| ID | 6163667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3369087 |
|---|
| End bp | 3370016 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641665825 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001792075 |
|---|
| Protein GI | 171059726 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0000160779 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCC AGACCCGGCT CGCCGATCCG CTGTTCAGCA GCCTGCCGCG TGCGGAGCGG
CCGGCCTACG CCACCGGCAT GCTGCTCGAC GCGCAGGATT TCGGCGACGA GCAGACCTAT
CACCGCGGCC GGCTGGCGCG GGCGCTGGCC TTCCTGGCCG GCGGCGGCAC GCTGGCCGGG
TTGCCGGTGA GCCACGCCGC GGCGGTGACG CCGCAGCCGG AGGAGATCCG CGTCGCCGGC
GGCCTGGCGG TCGATCGGCT CGGCCGCTTG ATCGAGCTGC CGCGGCCGGC CTGCGTGCGG
CTGGTGCGCT GGTACGAGGC CACCCGCGCG GCTGACGACG GCGCCACGCT GCGCCGCGCG
ACCTACGACG ACCTGGCGCG ATTTGTTTCG CCGCGCCTGG CCGCCAGCGG CGCCACGCTG
CCAGCGCGCG CCGTGGTGGC CGACGTCTTC ATCCGCTTCG CCGCCTGCGA GGTCGGCCTG
ACACCGAGTT TTGCCGCCGG CCCGTTCGAT GCGCTGAACG CCGTCTCGAC CTCGCGCCTG
CGCGACGCCT GGGAACTGCA GCTGATCGCT CGCGAAGGCC TCGACGACAG CTACAGCGGC
CTGCCGCTGC CACCCGGCGG CGCGGCGATT CCGCCGCTCG AAACTGACAC CGCCGCCAGC
CTGGCCGCGC GCCGCGACGC GCTGCAGGAT GCCGTGCTCG GCGCCTACGC CGCCCTCGCC
CGCCGCAGTG ACGGCACCGA AGGCCTCGCC CCCGCGCCCG AACACCCGCC GACGCTGCTG
GACACCAGCG CCATCTTCCT AGCCCGGGTG CTGATCCCGG TCGACGCCGC CGACCCGCCG
CAGCGCACCG CCGACGCACC GCTGGTCGAC AACGGCGCGC GCCGTTTCCT GCCCGCGCTG
GCGCTGCTGG CGCAGGCCGG CGGGCTGTGA
|
|---|
| Protein sequence | MSIQTRLADP LFSSLPRAER PAYATGMLLD AQDFGDEQTY HRGRLARALA FLAGGGTLAG
LPVSHAAAVT PQPEEIRVAG GLAVDRLGRL IELPRPACVR LVRWYEATRA ADDGATLRRA
TYDDLARFVS PRLAASGATL PARAVVADVF IRFAACEVGL TPSFAAGPFD ALNAVSTSRL
RDAWELQLIA REGLDDSYSG LPLPPGGAAI PPLETDTAAS LAARRDALQD AVLGAYAALA
RRSDGTEGLA PAPEHPPTLL DTSAIFLARV LIPVDAADPP QRTADAPLVD NGARRFLPAL
ALLAQAGGL
|
|---|
| |