Gene Lcho_3047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3047 
Symbol 
ID6161574 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3365547 
End bp3368396 
Gene Length2850 bp 
Protein Length949 aa 
Translation table11 
GC content74% 
IMG OID641665822 
Productphage tail protein 
Protein accessionYP_001792072 
Protein GI171059723 
COG category 
COG ID 
TIGRFAM ID[TIGR02242] phage tail protein domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000000382276 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGACGCCA ACGGCGCGCG TTTCTGGCTG CTCGGCGAGG CGCGGCACTT TCCGAGCCGC 
AGCGCGCTGC ACTGGGACGA CAGCTGCCGT GTGCTGCGGC TGGCCTCGCA GCGCACGCTC
GTCAGCAGCC TGACGCCGGC GGCGGCCTTC ACGCTGGCGC AGAGCGCGCT CGAGCGCGTG
CCGCGTGCAG TCGACGCGCT CGAAGGCGTG GCGCGCTGGG ACGCGGCGCG CTCGGCGGTG
GTCGCCACCA GCCACCTGCC GGGTGACGCG GTGCTGCTGG CGCTCGGCGA GACGCCGACC
GACCTGTGTG CCGCGCCCGA CGGCGTGCTC TACATCGCCC TGCCCGGCCG CGTGCTGATG
CACGACCTGC GCGGGCGCTG GGCCGATGCG TCGGTCAGCC TCGCAGGCTT CGAACCCTGG
CGGCTGGCGC CGGCCGCAGT CGGTGGCGCC TGGGTGCTGG AGCGCAACAC CGGCCGCGTC
GCGCGCCTGA GCGGCCGGCC ACTGCGCACG CAGACGCCAC AGCCCGACGA CTACGACGGC
CGCACCTTCC GCCCCACGCC CGAAAACCGC TGCCCGCCAC AACTGCGCCT GCTGCCCACG
CCCACGCTGG CGCCGATCGA ACGGGTGCTG GCGCTGGCCG GTGGCGCCGA CGGCGTGCTG
GCGCTGCTGT CGTGGCGCGA TGGTGAAGGC ACCGCGTGCG TGCGCTGCTG GCGCGAAACG
GTCCCGGACG GCAGCATGAC CGGCATCCCG CCGCGCTGGA GCGAGCCGCT GCAGCTGACC
GGCGCGAGCT ACGCCTACGC GATCACTTGG CTGGAGGCCG GCCGGCTGGC GGTGCGCGTG
CCGGGCCGGC GCGATGCACC AGCGTTCGAT CTGAGCGACG AGCCGACCGG CAGCGTGGCG
CCGCTCGGCG ACATCTACCC GCTGGCCGGC GAGAACAACG GCCCGCCGCT CGAAGCGCCG
TTCGCCAACG GCGTCGCGCT GCCGCCGCAT TACCCGCGCG GCGAAACCGG CACGGCGCCG
CTACACGCGC TGTCGCTGAA CCAGTTGGCG CGCCGCGGCG AAGCGGGCAA CGCAGCCGAC
CCCACAGCCC CCGACACGCG CCACTGGCTG ATCGACAGCG GCGACAACAC CACCGTCTGG
CACCGCCTGT TCGCCGAGGC AGAAATCCCG CCGCACACCG GTTTCGTGGT CTGGCTGGCG
GCCGGCAACC AGGCCCAGCC GCCGGACTGG AACGCCGCGC AGGTCGACCG CGTCAGCTGG
CAGCCGCATG GTTTCGGCGC CGACATTCAC CAGCTCGACC CGGCGATGCG CGCCCCGCAA
CTGCCGCACG CGGTGTGGGA AAGCGCCGCC AGCGAACTCG CCGGCCACCC CGGCCTGCTG
GGCGGCGTTC GCGAGCCAGG CCGGCGCGGG CTGTTCTCGG TGCTGGTGCA GGACAGCCGC
CAGCGCGTGC GCCAGCTCGT CGGCCGCTAC CTGTGGGTGC GCGTGGTGCT GCATGGCGAC
GGCCGCGCCA GCCCCGAGCT GGCCGCGCTG CGCGCCTGGG GCAGCCGCTT TTCGTACGCC
GAGCAGTACC TGCCGCGGCT CTATCGCGAG CAGCTTTACG GCGACGCGGC CGCCGCGCCG
GGCCGCCGGC TGGGGCAGAT CGCCGCCAGC TTCGCCGCCG AGCTGGATGC GGCCGGCGCG
GCCGATCCGC TCGACCTCGG CGCACCGCTG CTGACCGCGC TCGCCCTCGT CGACATCGAA
CCCGGCGCGC TGGCGCGGCT CACGGTCGAG CGCGCCGGCG CCGCTTGGCT GCTGCAGCAG
GATCGCCAAG CGTGGCGCCT GCGCGTCGAG GCCGATCCCT TGCGCCCCGA TCAGCTCGAC
TCGGTGGCCA TCGGCATCTA CCAGCCGCAG GCCACGCCGG CCGATTTCAA CGCCCGCATG
CTGGCCAGTT TCGAAGGCGT GCTGACGCAG CTCGAAGACC GCGTGGCCGC AGCGCATCTG
CTGAGCGACC CGGAGGTCGT GCCCGAGGCC AGCCTCGACT GGCTCGGCAG CTGGATCGGC
GTGGCCTTCG ACCCCGCGCT GCCGGCGGCG CGTCGGCGCG AGTGGCTGCG CGCTGCGCCC
GAGCTGGCGC GCTGGCACGG CAGCCTGCGC GGCCTGCGCG GTGCGCTCGA CGTCGCCACC
GGCGGCGCGG TGCGGCAAGG TGGGGTGGTC GTGATCGAGG ATTTCCGGCT GCGCCGCATC
CTCGCCACGC TGCTGGGGGT CGACCTGGCC GATGAAGACG ACCCGCTGCT GCCGGGCCTC
GCACGCAGCG GTAACTCGAT CGTGGGCGAT ACGCTGGTGA TCGGCGAGAA CGAGAGCGTC
GAGCTGCTGG CACTGTTCAA CGAGGCCGTG GCCAGTGCGC GCGAAGACGC CGCGGTGGTC
GCTTTTCAAG AACGGCTGGC GCACCGCACC ACCGTGCTCG TCCATCAGGA AGTCGAGCCG
CAGGACTTGG CGCTGATCCG CCGCATCGTC CGGCTCGAAG CGCCGGCGCA CGTCGAGGTG
CGGGTGGCCA GCGCCACCTG GCCGCTGCTC GTGGGCATTG CCAGCCTGGT GGGCGTGGAC
ACCTACCTCG CGCCACCCCG CACGCCGCGG CCCGTGCAGG TTCAGCGCTC GGTGCTGGGC
CTGGGCGACT ACCTGATCGG CGCGCCGCTG CTCGACCCAC GCCTGAGCGG CATCGCGCAG
CCGGTGCCGC CGCCCGAGGC ACACGCCGGG CCGGACCGCA CCGTCGGCTC GGCCGCCAGT
TTCGTGCTCG ACGCCAGCGG CTCGACCGCC GCGCCGGGCC ACCAGATCAC CGAATACCGC
TGGCGCTGGC TGGCGCCAGA TCTCACCTAA
 
Protein sequence
MDANGARFWL LGEARHFPSR SALHWDDSCR VLRLASQRTL VSSLTPAAAF TLAQSALERV 
PRAVDALEGV ARWDAARSAV VATSHLPGDA VLLALGETPT DLCAAPDGVL YIALPGRVLM
HDLRGRWADA SVSLAGFEPW RLAPAAVGGA WVLERNTGRV ARLSGRPLRT QTPQPDDYDG
RTFRPTPENR CPPQLRLLPT PTLAPIERVL ALAGGADGVL ALLSWRDGEG TACVRCWRET
VPDGSMTGIP PRWSEPLQLT GASYAYAITW LEAGRLAVRV PGRRDAPAFD LSDEPTGSVA
PLGDIYPLAG ENNGPPLEAP FANGVALPPH YPRGETGTAP LHALSLNQLA RRGEAGNAAD
PTAPDTRHWL IDSGDNTTVW HRLFAEAEIP PHTGFVVWLA AGNQAQPPDW NAAQVDRVSW
QPHGFGADIH QLDPAMRAPQ LPHAVWESAA SELAGHPGLL GGVREPGRRG LFSVLVQDSR
QRVRQLVGRY LWVRVVLHGD GRASPELAAL RAWGSRFSYA EQYLPRLYRE QLYGDAAAAP
GRRLGQIAAS FAAELDAAGA ADPLDLGAPL LTALALVDIE PGALARLTVE RAGAAWLLQQ
DRQAWRLRVE ADPLRPDQLD SVAIGIYQPQ ATPADFNARM LASFEGVLTQ LEDRVAAAHL
LSDPEVVPEA SLDWLGSWIG VAFDPALPAA RRREWLRAAP ELARWHGSLR GLRGALDVAT
GGAVRQGGVV VIEDFRLRRI LATLLGVDLA DEDDPLLPGL ARSGNSIVGD TLVIGENESV
ELLALFNEAV ASAREDAAVV AFQERLAHRT TVLVHQEVEP QDLALIRRIV RLEAPAHVEV
RVASATWPLL VGIASLVGVD TYLAPPRTPR PVQVQRSVLG LGDYLIGAPL LDPRLSGIAQ
PVPPPEAHAG PDRTVGSAAS FVLDASGSTA APGHQITEYR WRWLAPDLT