| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3047 |
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| Symbol | |
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| ID | 6161574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3365547 |
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| End bp | 3368396 |
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| Gene Length | 2850 bp |
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| Protein Length | 949 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641665822 |
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| Product | phage tail protein |
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| Protein accession | YP_001792072 |
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| Protein GI | 171059723 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02242] phage tail protein domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000000382276 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACGCCA ACGGCGCGCG TTTCTGGCTG CTCGGCGAGG CGCGGCACTT TCCGAGCCGC
AGCGCGCTGC ACTGGGACGA CAGCTGCCGT GTGCTGCGGC TGGCCTCGCA GCGCACGCTC
GTCAGCAGCC TGACGCCGGC GGCGGCCTTC ACGCTGGCGC AGAGCGCGCT CGAGCGCGTG
CCGCGTGCAG TCGACGCGCT CGAAGGCGTG GCGCGCTGGG ACGCGGCGCG CTCGGCGGTG
GTCGCCACCA GCCACCTGCC GGGTGACGCG GTGCTGCTGG CGCTCGGCGA GACGCCGACC
GACCTGTGTG CCGCGCCCGA CGGCGTGCTC TACATCGCCC TGCCCGGCCG CGTGCTGATG
CACGACCTGC GCGGGCGCTG GGCCGATGCG TCGGTCAGCC TCGCAGGCTT CGAACCCTGG
CGGCTGGCGC CGGCCGCAGT CGGTGGCGCC TGGGTGCTGG AGCGCAACAC CGGCCGCGTC
GCGCGCCTGA GCGGCCGGCC ACTGCGCACG CAGACGCCAC AGCCCGACGA CTACGACGGC
CGCACCTTCC GCCCCACGCC CGAAAACCGC TGCCCGCCAC AACTGCGCCT GCTGCCCACG
CCCACGCTGG CGCCGATCGA ACGGGTGCTG GCGCTGGCCG GTGGCGCCGA CGGCGTGCTG
GCGCTGCTGT CGTGGCGCGA TGGTGAAGGC ACCGCGTGCG TGCGCTGCTG GCGCGAAACG
GTCCCGGACG GCAGCATGAC CGGCATCCCG CCGCGCTGGA GCGAGCCGCT GCAGCTGACC
GGCGCGAGCT ACGCCTACGC GATCACTTGG CTGGAGGCCG GCCGGCTGGC GGTGCGCGTG
CCGGGCCGGC GCGATGCACC AGCGTTCGAT CTGAGCGACG AGCCGACCGG CAGCGTGGCG
CCGCTCGGCG ACATCTACCC GCTGGCCGGC GAGAACAACG GCCCGCCGCT CGAAGCGCCG
TTCGCCAACG GCGTCGCGCT GCCGCCGCAT TACCCGCGCG GCGAAACCGG CACGGCGCCG
CTACACGCGC TGTCGCTGAA CCAGTTGGCG CGCCGCGGCG AAGCGGGCAA CGCAGCCGAC
CCCACAGCCC CCGACACGCG CCACTGGCTG ATCGACAGCG GCGACAACAC CACCGTCTGG
CACCGCCTGT TCGCCGAGGC AGAAATCCCG CCGCACACCG GTTTCGTGGT CTGGCTGGCG
GCCGGCAACC AGGCCCAGCC GCCGGACTGG AACGCCGCGC AGGTCGACCG CGTCAGCTGG
CAGCCGCATG GTTTCGGCGC CGACATTCAC CAGCTCGACC CGGCGATGCG CGCCCCGCAA
CTGCCGCACG CGGTGTGGGA AAGCGCCGCC AGCGAACTCG CCGGCCACCC CGGCCTGCTG
GGCGGCGTTC GCGAGCCAGG CCGGCGCGGG CTGTTCTCGG TGCTGGTGCA GGACAGCCGC
CAGCGCGTGC GCCAGCTCGT CGGCCGCTAC CTGTGGGTGC GCGTGGTGCT GCATGGCGAC
GGCCGCGCCA GCCCCGAGCT GGCCGCGCTG CGCGCCTGGG GCAGCCGCTT TTCGTACGCC
GAGCAGTACC TGCCGCGGCT CTATCGCGAG CAGCTTTACG GCGACGCGGC CGCCGCGCCG
GGCCGCCGGC TGGGGCAGAT CGCCGCCAGC TTCGCCGCCG AGCTGGATGC GGCCGGCGCG
GCCGATCCGC TCGACCTCGG CGCACCGCTG CTGACCGCGC TCGCCCTCGT CGACATCGAA
CCCGGCGCGC TGGCGCGGCT CACGGTCGAG CGCGCCGGCG CCGCTTGGCT GCTGCAGCAG
GATCGCCAAG CGTGGCGCCT GCGCGTCGAG GCCGATCCCT TGCGCCCCGA TCAGCTCGAC
TCGGTGGCCA TCGGCATCTA CCAGCCGCAG GCCACGCCGG CCGATTTCAA CGCCCGCATG
CTGGCCAGTT TCGAAGGCGT GCTGACGCAG CTCGAAGACC GCGTGGCCGC AGCGCATCTG
CTGAGCGACC CGGAGGTCGT GCCCGAGGCC AGCCTCGACT GGCTCGGCAG CTGGATCGGC
GTGGCCTTCG ACCCCGCGCT GCCGGCGGCG CGTCGGCGCG AGTGGCTGCG CGCTGCGCCC
GAGCTGGCGC GCTGGCACGG CAGCCTGCGC GGCCTGCGCG GTGCGCTCGA CGTCGCCACC
GGCGGCGCGG TGCGGCAAGG TGGGGTGGTC GTGATCGAGG ATTTCCGGCT GCGCCGCATC
CTCGCCACGC TGCTGGGGGT CGACCTGGCC GATGAAGACG ACCCGCTGCT GCCGGGCCTC
GCACGCAGCG GTAACTCGAT CGTGGGCGAT ACGCTGGTGA TCGGCGAGAA CGAGAGCGTC
GAGCTGCTGG CACTGTTCAA CGAGGCCGTG GCCAGTGCGC GCGAAGACGC CGCGGTGGTC
GCTTTTCAAG AACGGCTGGC GCACCGCACC ACCGTGCTCG TCCATCAGGA AGTCGAGCCG
CAGGACTTGG CGCTGATCCG CCGCATCGTC CGGCTCGAAG CGCCGGCGCA CGTCGAGGTG
CGGGTGGCCA GCGCCACCTG GCCGCTGCTC GTGGGCATTG CCAGCCTGGT GGGCGTGGAC
ACCTACCTCG CGCCACCCCG CACGCCGCGG CCCGTGCAGG TTCAGCGCTC GGTGCTGGGC
CTGGGCGACT ACCTGATCGG CGCGCCGCTG CTCGACCCAC GCCTGAGCGG CATCGCGCAG
CCGGTGCCGC CGCCCGAGGC ACACGCCGGG CCGGACCGCA CCGTCGGCTC GGCCGCCAGT
TTCGTGCTCG ACGCCAGCGG CTCGACCGCC GCGCCGGGCC ACCAGATCAC CGAATACCGC
TGGCGCTGGC TGGCGCCAGA TCTCACCTAA
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| Protein sequence | MDANGARFWL LGEARHFPSR SALHWDDSCR VLRLASQRTL VSSLTPAAAF TLAQSALERV
PRAVDALEGV ARWDAARSAV VATSHLPGDA VLLALGETPT DLCAAPDGVL YIALPGRVLM
HDLRGRWADA SVSLAGFEPW RLAPAAVGGA WVLERNTGRV ARLSGRPLRT QTPQPDDYDG
RTFRPTPENR CPPQLRLLPT PTLAPIERVL ALAGGADGVL ALLSWRDGEG TACVRCWRET
VPDGSMTGIP PRWSEPLQLT GASYAYAITW LEAGRLAVRV PGRRDAPAFD LSDEPTGSVA
PLGDIYPLAG ENNGPPLEAP FANGVALPPH YPRGETGTAP LHALSLNQLA RRGEAGNAAD
PTAPDTRHWL IDSGDNTTVW HRLFAEAEIP PHTGFVVWLA AGNQAQPPDW NAAQVDRVSW
QPHGFGADIH QLDPAMRAPQ LPHAVWESAA SELAGHPGLL GGVREPGRRG LFSVLVQDSR
QRVRQLVGRY LWVRVVLHGD GRASPELAAL RAWGSRFSYA EQYLPRLYRE QLYGDAAAAP
GRRLGQIAAS FAAELDAAGA ADPLDLGAPL LTALALVDIE PGALARLTVE RAGAAWLLQQ
DRQAWRLRVE ADPLRPDQLD SVAIGIYQPQ ATPADFNARM LASFEGVLTQ LEDRVAAAHL
LSDPEVVPEA SLDWLGSWIG VAFDPALPAA RRREWLRAAP ELARWHGSLR GLRGALDVAT
GGAVRQGGVV VIEDFRLRRI LATLLGVDLA DEDDPLLPGL ARSGNSIVGD TLVIGENESV
ELLALFNEAV ASAREDAAVV AFQERLAHRT TVLVHQEVEP QDLALIRRIV RLEAPAHVEV
RVASATWPLL VGIASLVGVD TYLAPPRTPR PVQVQRSVLG LGDYLIGAPL LDPRLSGIAQ
PVPPPEAHAG PDRTVGSAAS FVLDASGSTA APGHQITEYR WRWLAPDLT
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