| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3046 |
|---|
| Symbol | |
|---|
| ID | 6161573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3363265 |
|---|
| End bp | 3365547 |
|---|
| Gene Length | 2283 bp |
|---|
| Protein Length | 760 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641665821 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001792071 |
|---|
| Protein GI | 171059722 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02243] conserved hypothetical protein, phage tail-like region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.000000814337 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATCC GACCGCCCTC ACTCGACGAC CGCCGTTTCG ACGACCTGGT CGACGACCTG
ATCGCACGCA TCCCCGCGCA CACGCCGGAG TGGACGAACC CGCGCCTGGG CGACCCGGGG
CGCACGCTGA TCGAGCTGTT CGCCTGGCTG GGCGACGCGC TGCTGTACCG CGCCAACCTG
ATCCCCGAGC GCCAGCGGCT GGTGTTTTTG CAGCTGCTCG GCATGGGGCT GAAGCCGGCG
CTGCCCGCGC GCGGCATCGT CGGGCTGGCG TTCGCGCAGG AGAAGGAACT GGGCGCGCAT
ATCCTCGCGC CGTTCGGCCG CATCAAGGCC ACGCCGGCGT TCGAGACACT GGCCGAAATC
ACCGTGCTGC CGATCAGCGG CGAGGCCTAC GTCAAGCGCC GCCTGCCTTC GGCCGAACTG
GCGCGGCGCA GCGATTTGCT GCACGGCCTC GTACGCATCC ACCAGCTGAG CGCCGCGCCC
AAGGCCTACA CGACCACGCA GGTCTACGCC GACGGCCGCG CCGCTGCAGA GGGCGTCGAC
GTGTTCGGCC AGAGCGCCGA CCGCGCGCTG TGGATCGCGC TGCTGGCGCC GCCGGCCGGC
AATCCCGAGG ATCAGCCCGC CACCAACGAG GCGGTCAAAT CGGCCATCGG CGGCGGCGAC
AGCGGCCTGC CCGCGCTGCT GTCGGTCGGC GTGGTGCCGG CCATCAAGCC GCTGCAACCC
TTCGAGCAGA CCAGCGCGCC GAGCCCCGTG CCGGTGTGGT GGGAGATCAC CACGCGCGGG
CAAAGCGACG TCGACACCGA TTACCTGCGC CTGACCGTCG AACCCGGCAC CGACACCAGC
GCCGGCCTGA CCCGCGCCGG CACGCTGCGG CTGCGTTTGC CCGACGAGCG CCACCTGTGG
GCGCCATCGA ACGACGTCGG CATCAACCCG CGTGCCGGTG TCGGCGATGC ACCGCCGCGG
CTCGACGACG CGGAGCGCGC CGCCCGCCTG ATCGCCTGGC TGCGCCTGCG CCCGCAACCG
GGCGCCAACG TCGAACACCT GGCGCTGACC TGGCTGACGC TCAACGCCGC CGAGATCGAC
CAGCGCCAGA CGATCACCGC GCAGGTACTC GGCAGCGCGA CCGGCGCGGC CGACCAGAGC
TACGCGCTGC CGCTCGGTTC GGTCGATGCG GCGACGCTGG CGATCCAGGT CGAGGAGCCC
GGCCGCGGTT ACCAGGATTG GCAACGTGTC GACGACCTCG CCGCCATCAG CGCCGACCCC
AACGTGGCGC GCGAGGCCCG TGCCTTCGAG CTCGACGCCG AAGCCGGCCG ACTGCGTTTC
GGCGACGGCC TGCGCGGGCG CGTGCCCGAG GCCGGCATGC GGGTGCGGCT GGCGAGCGGG
CGTTTCGGCG GCGGCCGTGC CGGCAACCTG CCGCCGCAGA GCCTGGCCAA GCTCGAAGCG
CGCCGCATCG ACGGCCAGCC CGCGCCGGCG ATCAAGGTGC TGCAGCCGCT GGCCTTGTCG
GGCGGCGAGG ATGCCGAAAC GCTCGATCTG GCCGAGCGCC GCATCCCCGC GCTGCTGCGC
CATCGCGACC GCGCCGTCAC CGAAGAGGAC TTCCGCCGCC TGAGTTTCGA GACACCCGCG
GTCGACGTCG GCCGGGTCGA CGTGCTGCCG CGTTTCAAGC CGAGCGATCG GCGTTTCAAC
ATGCCGGGTG TGGTCAGCGT GATGGCGCTG CCGGCGGTTC AATTCGGCAG CACGCCGCAC
CCGCGGCCCG ACCGGCCTTT CATCGAGCGC GTGCACGCGC ACCTGTCGGC GCGCACGCCG
CTGGCCACCG AGCTGTACGT GATCGGCTGC GACTACGTGC CGCTGGGGCT CAGCGTGGCG
GTGACGCTGC GCGACGGTTT TGCGCGCGAC CAGGTGCTGC TCGACATCAA GCAGGCGCTG
ACCCGCTTCC TCTGGCCGCT GGCGCCGGGC GGGCTGGACC AGGCCGGCTG GGCGCTCGGC
CGCGCGGTGC GCAGCCGCGA GCTGGAGGTC GAGGTGTCGC GCGTGGCGGG GGTCGACGAG
CTGCGTGGCC TGGCGCTGTT TGGCCAGCGT GACCCGGCCC AGGGCGACAC CACCTGGCAG
CGCCTGCCGG TGATCGCCGC CGATGGCGCG CAGATGCTGA CGCTGCAGCC CTGGCAGCTG
CCCGAACTGC TGGCAGTGGT GGCGGTCGAA GGCCCGAACG CGCCGGCCGA CCTGCGCGCC
TTGCCCAACC CCTACGCCGA CCCGACCGCG ATCGCGGTTC CTGTCGTGCC GGAGGTCTGC
TGA
|
|---|
| Protein sequence | MPIRPPSLDD RRFDDLVDDL IARIPAHTPE WTNPRLGDPG RTLIELFAWL GDALLYRANL
IPERQRLVFL QLLGMGLKPA LPARGIVGLA FAQEKELGAH ILAPFGRIKA TPAFETLAEI
TVLPISGEAY VKRRLPSAEL ARRSDLLHGL VRIHQLSAAP KAYTTTQVYA DGRAAAEGVD
VFGQSADRAL WIALLAPPAG NPEDQPATNE AVKSAIGGGD SGLPALLSVG VVPAIKPLQP
FEQTSAPSPV PVWWEITTRG QSDVDTDYLR LTVEPGTDTS AGLTRAGTLR LRLPDERHLW
APSNDVGINP RAGVGDAPPR LDDAERAARL IAWLRLRPQP GANVEHLALT WLTLNAAEID
QRQTITAQVL GSATGAADQS YALPLGSVDA ATLAIQVEEP GRGYQDWQRV DDLAAISADP
NVAREARAFE LDAEAGRLRF GDGLRGRVPE AGMRVRLASG RFGGGRAGNL PPQSLAKLEA
RRIDGQPAPA IKVLQPLALS GGEDAETLDL AERRIPALLR HRDRAVTEED FRRLSFETPA
VDVGRVDVLP RFKPSDRRFN MPGVVSVMAL PAVQFGSTPH PRPDRPFIER VHAHLSARTP
LATELYVIGC DYVPLGLSVA VTLRDGFARD QVLLDIKQAL TRFLWPLAPG GLDQAGWALG
RAVRSRELEV EVSRVAGVDE LRGLALFGQR DPAQGDTTWQ RLPVIAADGA QMLTLQPWQL
PELLAVVAVE GPNAPADLRA LPNPYADPTA IAVPVVPEVC
|
|---|
| |