| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3036 |
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| Symbol | |
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| ID | 6162108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3353799 |
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| End bp | 3355589 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665811 |
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| Product | tail sheath protein |
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| Protein accession | YP_001792061 |
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| Protein GI | 171059712 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3497] Phage tail sheath protein FI |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00018204 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTGAAT ACCTGGCACC CGGTGTCTAC GTCGAAGAGA CGAGCTTTCG CGCCAAGTCC
ATCGAGGGCG TGGGCACCAG CACCACTGCC TTCGTCGGCC CGACCCGGCG CGGCCCGGTC
GGCACCCGCT CGGAGCTGAT CACCAGCCTG CCGGACTTCG AGCGCTACTA CGGCAGTCTC
GAGAACCTCG CGCTCAGCGA CGTCAGCGCG GCGGCGAATC GGCTCAACTT CCTGGCCCAC
GCGGTGCGGG CGTATTACGA CAACGGCGGC TCGCGGCTCT ACGTGGTGCG CACCGCCAAC
GGCGCCGGCA GCGCCAGCGC GCCGCTGATC CTGACCGGCG CCCCGCCGGC TGAACCCGCC
ACCGAGGCCG ACCGCGTCAC CGCCCGCGCC CGTTTCCCCG GCGCCAGCGG CAACGGCCGC
CTGCTGCTGC GCGAAGTGCC GCGCCCGGCT ACCGCCCGCA CGCTCGACAC CGCACCCGCC
GGCAGTCTGG CGCGTGTCAC CGTGAGCAGC GGCGCGCCAC CGGTCGACAC CGTCACGCTC
TACCAGAAGG TCGGCAACCT CTGGCAGGAC AGCGCCACGC CCGCCGGCAC GCTGACCGTG
GCCGACCCGA TCCGCGCCGA GCTGCTGACG CTGGCCGCCG AGTTCATCGA CGCCGACGGC
TACGTGCAAG GCTGGGACGA GCTCGGCCTG GCCGCCGGCC ACCCGCGCGC CATCGGCACC
GTGCTGGCCG AACACCCGAG CACCCGCAGC GACGACCTGC AGAACCTGGT GTGGCTGCAG
ATCGGCAGCG GTGTCAACGC CTTCGAGCTG CAGGCCGCGA TCGCCGCGCT GCCCGCGCTG
GCCGGCGACA CCGAAGGCCG ACGCTTCGCC AACCTGAGTG GCGGCAGCGA CGGCGCCGCA
CCCGGCGTGG GCGCCGCCAC CAGCGTCGGC AGCTACGCCC ACGCGCTGGC GCAACTGCTC
GCGCTCGAAG ACGTCGCCAT CGTCGCCGCC CCCGGCAGCA GCGCCTACGC CGACGCGCAG
GCGGTGCAGA ACGCGCTGAT CGGCCACGCC GAAACGCGCC GCGCCTACCG CATCGCCGTG
CTCGACACGC CGCCGCTGCA GACCCCCGGC CAGGTGCGCG ATGCGCGTGG CCGCATCGAC
AGCAAATACG CCGCGCTCTA CTACCCGTGG GTGGTCACGC CCAACCCGCT GGCACGGCCC
GGCCGCGACG ACATCCCGCG CGAGATCACG CTGCCGCCGT CGGGCTTCGT GGCCGGCGTC
TACGCCCGCA ACGACATCGA ACGCGGCGTC TACAAGGCGC CGGCCAACGA GGTGGTGCGC
GGCGCGCTGC GTTTCGAGAC CGACATCAAC TTCGCCCAGC AGGAGGTGCT CAACCCGATC
GGCATCAACT GCCTGCGCTA CCTGAGCGGG CGCGGCTACC GGGTGTGGGG TGCACGGCTG
GCGTCGAGCG ATCCGGAATG GAAGTACGTC TCCGACCGGC GCTACTTCAA CTACCTCGAA
TCGTCGATCG ACCGCGGCAC GCAGTGGGCG GTGTTCGAGC CCAACGGCGA GCGCCTGTGG
GCCAACGTGC GGCAGACCAT CTCCGACTTT TTGTACAACG AATGGCGCGG CGGCGCGCTG
CTCGGCGGCT CGGTCGAAGA GGCGTTTTTC GTGCGCTGCG ACCGCAGCAC CATGACGCAG
AACGACCTCG ACAACGGCCG CCTGATCTGC CTGATCGGCG TGGCCATCAT CAAGCCGGCC
GAGTTCGTGA TCTTCCGCAT CGGCCAGAAG ACCGCCGACG CCCGCGCCTG A
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| Protein sequence | MPEYLAPGVY VEETSFRAKS IEGVGTSTTA FVGPTRRGPV GTRSELITSL PDFERYYGSL
ENLALSDVSA AANRLNFLAH AVRAYYDNGG SRLYVVRTAN GAGSASAPLI LTGAPPAEPA
TEADRVTARA RFPGASGNGR LLLREVPRPA TARTLDTAPA GSLARVTVSS GAPPVDTVTL
YQKVGNLWQD SATPAGTLTV ADPIRAELLT LAAEFIDADG YVQGWDELGL AAGHPRAIGT
VLAEHPSTRS DDLQNLVWLQ IGSGVNAFEL QAAIAALPAL AGDTEGRRFA NLSGGSDGAA
PGVGAATSVG SYAHALAQLL ALEDVAIVAA PGSSAYADAQ AVQNALIGHA ETRRAYRIAV
LDTPPLQTPG QVRDARGRID SKYAALYYPW VVTPNPLARP GRDDIPREIT LPPSGFVAGV
YARNDIERGV YKAPANEVVR GALRFETDIN FAQQEVLNPI GINCLRYLSG RGYRVWGARL
ASSDPEWKYV SDRRYFNYLE SSIDRGTQWA VFEPNGERLW ANVRQTISDF LYNEWRGGAL
LGGSVEEAFF VRCDRSTMTQ NDLDNGRLIC LIGVAIIKPA EFVIFRIGQK TADARA
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