| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3031 |
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| Symbol | |
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| ID | 6162468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3348587 |
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| End bp | 3350452 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641665806 |
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| Product | allophanate hydrolase |
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| Protein accession | YP_001792056 |
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| Protein GI | 171059707 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | [TIGR02713] allophanate hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.153598 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATATC CCTTGTTGTA TACCAGTGAG TGCACCAAAA CCGTGACATC CACCACACAA
GCCCCCCGTA CCCTGACGCA ATGGCAAGAG GCCTACCGGG CCGGAGCCGA GCCGGCGGAC
CTGCTGCCGG CGCTGCGACA TCGGTTGATC CGTGGTGACG ATCCGGCGGT GATCCGCTGG
GTGACGGGCG ACGAGTTGGC ACGCCGCCTC GGCCAGCTGG CCGAGGTGGC CGCGGCCCAT
GCCGACCGCG CCGCGCTGCT CAAGGTGCTG CCGCTGTTCG GCGTGCCGTT CGCGGTCAAG
GACAACATCG ACATCGCCGG CATCGAGACC ACCGCCGCCT GCCCGGCCTT TGCGCACGTG
GCCGGCCAGT CGGCCGAGGC CGTGCGCCGG CTCGAAGCAG CCGGTGCGGT GTGGATCGCC
AAGACCAACC TCGACCAGTT CGCCACCGGC CTGGTCGGCG CTCGCAGCCC CTACGGCCGG
CCAGCCAGCG TGTTCGACGC CGCGCGCATC AGCGGCGGAT CCAGTTCGGG CTCGGCGGTG
CTGACCGCGC GTGGCGACGT GGCTTTTGCG CTCGGCACCG ACACCGCCGG CTCGGGTCGC
GTGCCGGCGG GTTTCAACGA ACTGGTGGGC CTCAAGCCGA CGCCCGGGCG GGTCAGCACC
GCCGGCGTGC TGCCGGCCTG CCGCAGCCTC GATTGCGTGT CGGTGTTCGC CCACTCGGTC
GAGGACGCCG CCGTGGTGCT GTCGGTGATC GAAGGCGCCG ATGCGGCCGA TGCCTACAGC
CACTTCGCGC CCGGCCCGTC GACCTGGGCG CCGCGCCTGA AGGTGGGCGT GCCGCGCGTG
CCGTTCTTCT TCGGCGACGC GGGTTACGAG GCCGCGTGGT CCTGGGCCGT GGCGCAGATG
GCCGCGCTCG GCCACGAGAT CGTCGCGCTC GACTTCGCGC CGCTCGACGA AGTGGCGGCT
CTGCTCTACG ACGGCCCGTG GGTGGCCGAG CGCCATGCGG TCGTCGCGGC GCTGCTGAGC
GCGCAACCCG ATGCGCTCGA CGCCACCGTG CGCCGCGTCA TCACGCGCGC CGTCGGCATG
AGCGCCACCG ACGCCTTCCG CGGCCTCTAT CGCCTGCAGG ACCTGAAGGC GGCGGGGGAG
GCCACCTGGT CGCGCTGCGA CCTGCTGATG GTGCCGACCG CGCCCGGCCA TCCGCGTTTC
AGCGAACTCG ATGCCGACCC GGTGGGCGTC AACTCGCTGC TCGGCCGCTA CACCAACTTC
GTCAACCTGC TGGGCTGGTG CGCGCTGGCG CTGCCGGCCG GGCGCACCGC GGTTGGCCTG
CCGTTCGGCG TGACCTTCAT CGCGCCGGGC AATCACGACG CCGCACTGGC GCGTTTCGGC
CTGGGCTGGC AGGCGGCGCA GGGCGTTGCC TCACCGGCGG CGACGCCCGC TCTCTGGCCC
CAGTCCGAGC CCGAGATGGC GATCGCGGTG GTCGGCGCGC ATCTGTCCGG CCTGCCGCTG
AACTGGCAGC TGACCGAACG CGGCGCCACG CTGATCGAAG CCACCCGCAC CGCGCCGCGC
TACCGCCTGC ACGCGCTGCC CGGCACCGTG CCGCCCAAGC CCGGCATGGT GCGCGACAGC
CTGCGCGGCG GCTCGATCGC GCTCGAGGTC TGGCGCATGC CGCAGCGCGC GGTCGGCAGC
TTCCTGGCGC TGATCCCGCA GCCGCTCGGC CTGGGCTCGA TCGAGCTGGC CGACGGCCGC
TGGGTGCACG GTTTCGTCTG CGAGGCCGAA GCCACCGCGC AGGCAAGCGA CATCACCGAG
CTGGGCGGCT GGCGGGCCTA CCTGCAAGCC GTTGCCGCCG CCCTTCCTGT CCCCCCGAGG
AGTTGA
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| Protein sequence | MQYPLLYTSE CTKTVTSTTQ APRTLTQWQE AYRAGAEPAD LLPALRHRLI RGDDPAVIRW
VTGDELARRL GQLAEVAAAH ADRAALLKVL PLFGVPFAVK DNIDIAGIET TAACPAFAHV
AGQSAEAVRR LEAAGAVWIA KTNLDQFATG LVGARSPYGR PASVFDAARI SGGSSSGSAV
LTARGDVAFA LGTDTAGSGR VPAGFNELVG LKPTPGRVST AGVLPACRSL DCVSVFAHSV
EDAAVVLSVI EGADAADAYS HFAPGPSTWA PRLKVGVPRV PFFFGDAGYE AAWSWAVAQM
AALGHEIVAL DFAPLDEVAA LLYDGPWVAE RHAVVAALLS AQPDALDATV RRVITRAVGM
SATDAFRGLY RLQDLKAAGE ATWSRCDLLM VPTAPGHPRF SELDADPVGV NSLLGRYTNF
VNLLGWCALA LPAGRTAVGL PFGVTFIAPG NHDAALARFG LGWQAAQGVA SPAATPALWP
QSEPEMAIAV VGAHLSGLPL NWQLTERGAT LIEATRTAPR YRLHALPGTV PPKPGMVRDS
LRGGSIALEV WRMPQRAVGS FLALIPQPLG LGSIELADGR WVHGFVCEAE ATAQASDITE
LGGWRAYLQA VAAALPVPPR S
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