| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3026 |
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| Symbol | |
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| ID | 6160848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3345147 |
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| End bp | 3346292 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641665801 |
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| Product | basic membrane lipoprotein |
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| Protein accession | YP_001792051 |
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| Protein GI | 171059702 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACACG ACGCCGACAA GCCCGAAACC ACCTCCCCGC TGCGCCGCCA GCTGCTGGCC
GGCGGCGCCC TGGCGGGTGC CTCGCTTGCG CTGCCCGGCG CACTGCGCGC CGCACTGGCG
CAGACGCCGG TCGTGGTCGG CGTGATCTAC GTCGGCCCGC GCGGCGACTT CGGCTACAAC
CAGGCGCAGG CCGCGGCTGC CGCGGCGATC AAGAAGCTGC CGGGCGTCAA GGTGGTCGAG
GAAGAAAACG TGCCCGAAAC CGCCGCGGTG CAGAAGACCA TGGAGGCCAT GATCAACCAG
GACAAGGCCA CGCTGATCTT CCCGACCTCG TTCGGCTACT TCGACCCGCA CATGCTGAAG
ATGGCCGAGA AGTACCCCAA GGTGCGCTTC GCCCACTGCG GCGGCATGTG GACCGCCGGC
AAACATCCGA CCAACACCGG CAGCTACTTC GGCTACATCG ACGAATGCCA GTTCCTGGCC
GGCGTGGTCG CTGCCCACGC CAGCAAGACC AAGAAACTCG GTTTCATCGC CGCCAAGCCG
ATCCCGCAGG TGCTGCGCAA CATCAACGCC TTCACGATGG GCGCACGCTC GGTCGACCCG
GCCTTCACCA CCCGCGTGAT TTTCACCGGC GAGTGGTCGA TGCCGGTGAA AGAAGCCGAA
GCCGCCACCA GCCTGATCGA CCAGGGCGTG GACGTGTTGA CCTGCCACGT CGACAGCCCG
AAGGTGATCG TCGAGACCGC CGAGAAGCGT GGCGTCTTCA GCTGCGGCTA CCACGCCAGC
CAGGCCGCGC TCGCGCCCAA GGGCTATCTC ACCGGCGCCG AGTGGGACTG GGCCACGCCC
TATGCCGCGC AGATCAAGGC GGCGCAAAGC GGTGCGGCGA TGCCCAACTT CCTGCGCGGC
GGCTTGAAGG ACGGCTACGT GAAGCTGTCG CCCTACGGCG CCGCCGTCTC GGCCGCGGCC
AAGAAGAAGG CCGACGAGAT CAAGGCCGCG ATGGTGGCGG GCAAGTACGT CATCTTCAAG
GGCGGCCTGA AGGACAACAA GGGCGCGGTC GTGATCCCGG CGGGTAGCAA CCTCGAACAG
TTCAACCCCG AGCTGGAGAA GATGAACTAC CTGGTCGAGG GCGTGCTCGG TTCGATCCCA
GGCTGA
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| Protein sequence | MKHDADKPET TSPLRRQLLA GGALAGASLA LPGALRAALA QTPVVVGVIY VGPRGDFGYN
QAQAAAAAAI KKLPGVKVVE EENVPETAAV QKTMEAMINQ DKATLIFPTS FGYFDPHMLK
MAEKYPKVRF AHCGGMWTAG KHPTNTGSYF GYIDECQFLA GVVAAHASKT KKLGFIAAKP
IPQVLRNINA FTMGARSVDP AFTTRVIFTG EWSMPVKEAE AATSLIDQGV DVLTCHVDSP
KVIVETAEKR GVFSCGYHAS QAALAPKGYL TGAEWDWATP YAAQIKAAQS GAAMPNFLRG
GLKDGYVKLS PYGAAVSAAA KKKADEIKAA MVAGKYVIFK GGLKDNKGAV VIPAGSNLEQ
FNPELEKMNY LVEGVLGSIP G
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