| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3018 |
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| Symbol | |
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| ID | 6161084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3334468 |
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| End bp | 3337911 |
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| Gene Length | 3444 bp |
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| Protein Length | 1147 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665793 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001792043 |
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| Protein GI | 171059694 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGCG CCGCCGGCGG CGCCACCCTC ATCCTGCTGC TCGGCACCGC CTGGCTGGTC
GCCGGGCCGC AGCCGGCGTC GTGGTTCACC GCGATCCAGA CGCTGCTGTG CGCCAGCCTG
GCCGGCTGGC TGATCCGGCG TGCCGCACGG GCCCAGGAGC AGGCCGAGCA GGCGCACAAG
CGGGTCGCGG ACGTGGTGGC CGACGCCGCG GTCGGCATCA GCCTGACCGC GCTCGACGGC
CGCCTGACCG AGGTCAACCG GCGCTTTGCC GAGATCGTCG GACGCACGGT CGAGGAAACC
CAGCGCCTGC GCTTCCAGGA CATCACCCAC CCGGACGATC TGGCCGCCGA CCTCGACAAA
GTCGCGGATC TGCTGGCCGG CCGGATCGAC CGCTACCGGA TGGAAAAGCG CTACCTGCGG
CCCGACAGCA GCACGATCTG GGTGACGCTG ACGGTCTCGC TGGCACGGGG TGCCGACGGC
CAGCCGCGCC AGTTCATCTC GGTGGTGCAG GACATCACCG CGGTCAAGCA GGCCGAAGGC
GACCTGCTGC GCCAACGCCG CCAGCTGCAG CAGATCATCC AGAGCATCCC CGACTGCGTG
GCGGTGCGCG ACCTCGACGG CCGCTACCTG CTCGCCAACC CGGCCGCCGA ACGACTGATC
GGCCTGTCCG AAGCCGAGAT CTGCGGCCGC ACCCTCGAGC AGATCTACCC GGAGCCCGAG
GCCGGCCAGG CACGCCGGGC CGACCGGCTG GCGCTCAGCC AGAACGGCCT GGTGCGGCGC
GAGGCCAGCT ACACCGCCGC CGACGGCAGC GTCGCCACGG TCGACCTGGC GATCTCGCCG
CTGCTGGGCA TCGACGGCCG CGCCACCGGC ATCATCTCGG TCGGCCGCGA CGTCAGCCGC
GAGCGCCACA ACCTGCGCCT GCTCGAACAG GCCCACCGGC GCAACCACGA ACTGCTGGCC
GAGGCCGAAC GCTCGCGGCT GGCGCTGCTG TCGCTGCTCG AGGACCAGCA GCTGGGCCAG
CAGGCGCTCG CCGCCAGCGA ACGCCACCTG CGCGCGGTGG TCGCCGCGCT GCCGGACCTG
ATCTTCCTGT TCGACGCGGA CGGCGTGATC GTCGACCTGT GGGCCAGCCA GCAGGACAAG
CTGCTGATGC CGCGCGAGCA GGTGATCGGC CGGGCCATCG CCGACCTGCT GCCCCCCAGC
CTGACCGCCA CCGCGCTGCA CCACATCGCC CGCGTGCTGG CCGAGGACGC GGCACAGATC
TTCGAGTACA CCCTGCCGCT GCCCGACGGC GAGCACGGCT TCGAGATGCG CATGGCCCGC
GCGGGGAGCC GCGAGGTGCT GGCGATCGCG CGCGACATCA CCGCCGAACG CGACGCCCGC
GCCGCCCTGC AGCGCAGCGA AGCCAGCCTG CGACTGGCGG TCGACGGCAG CGGCGACGGC
CTCTGGGACT GGGACCTGAT CACCGACAAG ATCAGCTTCG GCGCCGCCTA CGCCCGCCTG
CTGCGCTACC CCGGCAACGA CCTGGCGCGT GATTTCCGGT TCCGCGAGCG GCTGCATCCC
GACGACCGCG ACCGGAGCAT CGCCGCGGTG CGCAACTCGA TCGAATACGG CACCCCGTTC
GTCGCCACCT ACCGCATGCG GTGCTTCGAC GGCGAGTACC GCTGGTTCCA GGGCCGCGGC
ATGTGCCACC GCGACGCGCA CGGCACGCCG CAGCGCTTCT CGGGCGTGCT GACCGACCTG
ACCGACCGCC TGCAGGCCGA GGAGCGCCTG CGCCTGGCCG CGCAGGTGTT CGACAGCACC
CAGGAGGGCG TGATGATCAC CGACGCGCGG CGCCGCATCG TCTCGGTCAA CCGCGCCTTC
ACCACGCTGC TGGGCTACAC CGAAACCGAG GTGCTCGGCC AGACCCCGCG CATGCTCAGC
TCGGGGCGCC ACGACCGCGA CTTCTACGAG GCGATGCAGG CCCAGCTGGA CCACACCGGC
CTCTGGCAGG GCGAGATCTG GAACCGCCAC AAGGACGGCT CGCCGGTGCC CGAACTGCTG
TCGATCAGCG CGGTGCGCGA TCCGCACGGC CAGGTGACCC ATTACGTCGG CGTGTTCACC
GACATCACGC ACCTGAAGGA ATCCGAGGCG CGGCTGGAGT TCCTGGCCCA TCACGACCCG
CTCACGCACC TGCCCAACCG GCTGCTGTTC AACAACCGGC TCGACCAGGC GCTGCACCAG
GCCGAACGCG AGGGCCGCCG GCTGGCCGTG CTGCTGCTCG ACCTCGACCG CTTCAAGGAC
ATCAACGACA GCTACGGCCA CCTGGCCGGC GACGAGCTGC TGAAGTACGT GGCGCAGCGC
CTGACGCAGC GCCTGCGCCA GTCCGACACC CTGGCGCGGC TGGGCGGCGA CGAATTCGCG
CTGCTGATGC ACGACCTGCG CCACGACGAC GACGCCGCGC GGCTGGCCTC CGAGCTGCTG
AGCGGGCTCA GCGAGCCGTG GCGCAGCAGC GAGGGCGTCG AGGTCAGCGT GGGCGTGAGC
ATCGGCATCT GCATCTACCC CGACCACGGC CGGACCCCGC AGACGCTGCT GCAAGGCGCC
GACGCCGCGC TCTACCGCGC CAAGGGCGAC GGCCGCGGTG TCTACCGCTA CTACGCCGAC
GAGATGACGA GGATCGCACG CGAGCGCCTG CACATCGAGG CCCGGCTGCG GCGCGCGCTC
GCCGACGGCC AGCTGCTGCT GCACTACCAG CCGCAGGTCG ACCTGCGCAG CGGCCGCATC
ATCGGCGCCG AAGCGCTGGT GCGCTGGCAG GATCCCGAAC AGGGCCTGAT CCCGCCGGTG
CGCTTCATCC CGGTGGCCGA AGCCACCGGC CTGATCGGCG AGATCGGCGC CTGGGTGCTC
GGCGAGGCCT GCCGCCAGGC TCGGGCCTGG CTCGATGCCG GCCTGCCGGC GCTGACGGTG
GCCGTCAACG TCTCGCCGCG CCAGTTCCAC CAGGCCGATC TGGCCACGCA GGTGATGCAG
GTGCTGGTCG AGACCGGCCT GCCGCCGACC CACCTCGAGC TCGAGCTGAC CGAAGGCGCG
CTGATGGAGC GCGAGGCCGA AGCGCTGCAG GTGCTGCAGC GCCTGCGCGG GCTCGGCGTG
GGCGTGGCGA TCGACGACTT CGGCACCGGC TATTCGTCGC TCGCCTCGCT CAAGCGCTTT
CCGATCGACG TGCTCAAGAT CGACCGCAGC TTCATCACCG ACATCCCCGA CGACCCGGAC
GACATGGAGA TCGCCGCCGC CATCATCGCG ATGGGCCACA GCCTGGGCAT CCTGGTGCTG
GCCGAAGGGG TCGAGACGGC CGAGCAGCTG GCCTTCCTGC AGCAGCGCAA CTGCGACCGC
TACCAGGGTT TCCTGCGCAG CCGGCCGCTG CCGGCCCAGG CCTTCGAGCA GCTGCTGCGC
GAGCAGGCCA GCCTCACGGC CTGA
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| Protein sequence | MQRAAGGATL ILLLGTAWLV AGPQPASWFT AIQTLLCASL AGWLIRRAAR AQEQAEQAHK
RVADVVADAA VGISLTALDG RLTEVNRRFA EIVGRTVEET QRLRFQDITH PDDLAADLDK
VADLLAGRID RYRMEKRYLR PDSSTIWVTL TVSLARGADG QPRQFISVVQ DITAVKQAEG
DLLRQRRQLQ QIIQSIPDCV AVRDLDGRYL LANPAAERLI GLSEAEICGR TLEQIYPEPE
AGQARRADRL ALSQNGLVRR EASYTAADGS VATVDLAISP LLGIDGRATG IISVGRDVSR
ERHNLRLLEQ AHRRNHELLA EAERSRLALL SLLEDQQLGQ QALAASERHL RAVVAALPDL
IFLFDADGVI VDLWASQQDK LLMPREQVIG RAIADLLPPS LTATALHHIA RVLAEDAAQI
FEYTLPLPDG EHGFEMRMAR AGSREVLAIA RDITAERDAR AALQRSEASL RLAVDGSGDG
LWDWDLITDK ISFGAAYARL LRYPGNDLAR DFRFRERLHP DDRDRSIAAV RNSIEYGTPF
VATYRMRCFD GEYRWFQGRG MCHRDAHGTP QRFSGVLTDL TDRLQAEERL RLAAQVFDST
QEGVMITDAR RRIVSVNRAF TTLLGYTETE VLGQTPRMLS SGRHDRDFYE AMQAQLDHTG
LWQGEIWNRH KDGSPVPELL SISAVRDPHG QVTHYVGVFT DITHLKESEA RLEFLAHHDP
LTHLPNRLLF NNRLDQALHQ AEREGRRLAV LLLDLDRFKD INDSYGHLAG DELLKYVAQR
LTQRLRQSDT LARLGGDEFA LLMHDLRHDD DAARLASELL SGLSEPWRSS EGVEVSVGVS
IGICIYPDHG RTPQTLLQGA DAALYRAKGD GRGVYRYYAD EMTRIARERL HIEARLRRAL
ADGQLLLHYQ PQVDLRSGRI IGAEALVRWQ DPEQGLIPPV RFIPVAEATG LIGEIGAWVL
GEACRQARAW LDAGLPALTV AVNVSPRQFH QADLATQVMQ VLVETGLPPT HLELELTEGA
LMEREAEALQ VLQRLRGLGV GVAIDDFGTG YSSLASLKRF PIDVLKIDRS FITDIPDDPD
DMEIAAAIIA MGHSLGILVL AEGVETAEQL AFLQQRNCDR YQGFLRSRPL PAQAFEQLLR
EQASLTA
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