| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3016 |
|---|
| Symbol | |
|---|
| ID | 6161082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3331659 |
|---|
| End bp | 3332714 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641665791 |
|---|
| Product | ABC-type nitrate/sulfonate/bicarbonate transport system protein |
|---|
| Protein accession | YP_001792041 |
|---|
| Protein GI | 171059692 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGG CGACAAAAAG CCCGCATCCG GACAGTTTCG AAACACGCCG GATCGGCCCG
CGGATGGCAC GACGGCGGAT GCTCGGCGGG GCTGCTGCAA CCGCGGCCGC AACCGTGGCC
GCGGCGATCG GCCTGACCGG CTGCAGCCGG CGCGAGCCGC TGCTGCGCAT CGCCAGCAAT
GTCTGGCCGG GCTACGAACT GATGCACGCC GCCCAGGCGC TGGGCCGCTT CGACGAGGCC
GAGCTGCGCA TCATCGAGAT GCCCTCGTCG ACCGACGTGC TGCAGTCGCT GGCCTCCGGC
GTGATCGAGG GCGGCGGCCT GACGCTCGAC GAACTGCTGA GCGCACGCGC CGACGGGCTC
GACCTGTGCG CCGTGCTGGT GTTCGACGAA TCGACCGGCG CCGACGCGCT GATCGCGCAG
GCCGAGATCG GCAGCCTGGC GGCGCTGGTG GGCAAGCGCA TCGGCGTCGA GCAGACCGCC
ACCGGCGCGC TGGTGCTGCA CGCCGCGCTG CAGGCGGCGG GGCTGCGGCT CGAGCAGGTT
CAGCCGGTGT TCATGACGGT GGCGAACCAC CTGGCGGCTT GGCAGACTCG TCAGGTGGAT
GCCCTCGTGA CCTTCGAGCC GGTGCTCGGC GCCGCTGCCG CACAGGGCGC CAGGCGCCTG
TTCGACAGCC ATGCGATGCC GGGCCAGATC ATCGACGTGC TGGCGGTGCA TCGCAGCACG
CTGCAGCGCA ACCCGCAGGC CCTGCGCCGG CTGGTGCAGA TGCATTTCGA GATGCAGGCG
CTGTGGCTCA CCGAGCCGCA GCGGCTGGCG CCGGGCATCG GCGCGCGCCT GGGCCTGGCG
CCCGCGCAGG TGCCGGGCTT CCTGGACGGC CTGTCGATGC CCGGCCTTCT CGAGAACCAC
CAGTGGCTGG CCGGCAACCA GCCGCGCCTG CTGACGTCGG CGCGCCACCT GGAGCAGGTC
ATGCGCAAGG CCCGCCTGCT CACGCGCGCC GCGCCGCAGA CGCCGCTGTG CAGCACCGCC
GTGCTGCCGG CCCTGCCCGC GGGAGCCGAC ACGTGA
|
|---|
| Protein sequence | MKQATKSPHP DSFETRRIGP RMARRRMLGG AAATAAATVA AAIGLTGCSR REPLLRIASN
VWPGYELMHA AQALGRFDEA ELRIIEMPSS TDVLQSLASG VIEGGGLTLD ELLSARADGL
DLCAVLVFDE STGADALIAQ AEIGSLAALV GKRIGVEQTA TGALVLHAAL QAAGLRLEQV
QPVFMTVANH LAAWQTRQVD ALVTFEPVLG AAAAQGARRL FDSHAMPGQI IDVLAVHRST
LQRNPQALRR LVQMHFEMQA LWLTEPQRLA PGIGARLGLA PAQVPGFLDG LSMPGLLENH
QWLAGNQPRL LTSARHLEQV MRKARLLTRA APQTPLCSTA VLPALPAGAD T
|
|---|
| |