Gene Lcho_3012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3012 
Symbol 
ID6160855 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3326021 
End bp3327448 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content74% 
IMG OID641665787 
Producthistidine kinase 
Protein accessionYP_001792037 
Protein GI171059688 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGCGC CCGAGCCTCT GACGGTGCCC GGCCGAGCCC GCAGCCACTC GCTGCAGGGC 
CGGCTGGTGG CGCTGGTGCT GTCGGTCGTC ACCGCCGCGT GGCTGATCGC GGCGCTGCTG
ATCTGGCGCG ACACCGAACA CGAGCTCGAA GAGCTGCTCG ACGGCCATCT GGCGCAGGCG
GCGGCGCTGC TGGTGGCGCA GCAGTCACCC GAGTTCGACG ACGACGAGCT CGAGGACGCG
CCCAACCTGT ACCGCTATGC ACCACGGGTG GCGTTCCAGT TCTGGCACGA GGGCGAGCTG
GTGCTGCGCT CGGCCAATGC GCCGGCCGAG CCGATGTCGA CGCTGATACG CGGCATCGAG
ACCCGCCGCA TCGGTGACGA CGCCTGGCGG GTGTTCGCCA CCCGCGGCAA GGAAAGCGAC
GTGCAGGTGT TCGTCGGCGA GCGCATCCAG GCGCGCGAGG ACATCCTGGG CGCGCTGATC
CGCAACCTGT TCATGCCGCT GGCGCTGGTG CTGCCGCTGC TGGCGCTGGC GCTGTGGTGG
GCGGTGCGGG TGGGCCTGGC GCCGCTGCGC CAGCTCGCCG CGCTGCTGCG CCAGCGCGAG
CCGCAGGCGC TCGACACGCT GCACCTGCCG GCGCCTTTTG TCGAGATGGC GCCGCTGCTC
GAGGCGCTGA ACCGGCTGTT CGAGCGCATC GCGATGCTGC TCGAACAGGA GCGCCGCTTC
AACGCCGACG CAGCCCACGA GCTGACCACG CCGATCGCCG CCATCCGCGC CCAGGCCCAG
GTGGCGCTGC GCGAGAGCGA TGCCGAGCAG CGCCAGCACG CCCTGCGCGC CACGCTGTCG
GGCTGCGACC GCGCCAGCCA CCTGGTGGCG CAGCTGCTGC AGCTGGCGCG CATCGAAAGT
GCCGACGCCG ACGAGCGCGC GGCACAGGCG CCGCTCGACC TGAGCGCCCT GACCCGCAGC
GTGCTGGCCG ACCTGAGCCC GGCGGCGCGC GCACGCGGGC AGTCGATCGA GCTCGACGCA
CCGCCGCACT GCCAGGCCCG CGGCGACGCC GCGCTGCTGG GCGTGCTGAT GCGCAACCTG
GTCGACAACG CGATCCGCTA CAGCCCGCCG GGCACGCCGA TCCTGGTCAC GATCGGCGAC
GGCACGGACG AACCGGGCGG CACCCGCGGC CGCGCGCCGA GCTGGCAGAT CGACGACGGC
GGCCCCGGCC TCGCCGACGC CGAGCTGGCG CGGCTGGGCG AGCGTTTCTT CCGCGTGCTC
GGCAACGATG CGCCGGGCAG CGGGCTGGGC TGGTCGATCG TGCGGCGCAT CGCCCGCGCG
CTGGGGCTGA GCGTCGAGGT CGAGCGCTCG CGCCGGCTCG GCGGCCTGGC GGTGCGGCTG
CGCTGGCCCG AGCCGGGCGC CCGACCGGGT GGGAGCGTGG CGCGCTGA
 
Protein sequence
MAAPEPLTVP GRARSHSLQG RLVALVLSVV TAAWLIAALL IWRDTEHELE ELLDGHLAQA 
AALLVAQQSP EFDDDELEDA PNLYRYAPRV AFQFWHEGEL VLRSANAPAE PMSTLIRGIE
TRRIGDDAWR VFATRGKESD VQVFVGERIQ AREDILGALI RNLFMPLALV LPLLALALWW
AVRVGLAPLR QLAALLRQRE PQALDTLHLP APFVEMAPLL EALNRLFERI AMLLEQERRF
NADAAHELTT PIAAIRAQAQ VALRESDAEQ RQHALRATLS GCDRASHLVA QLLQLARIES
ADADERAAQA PLDLSALTRS VLADLSPAAR ARGQSIELDA PPHCQARGDA ALLGVLMRNL
VDNAIRYSPP GTPILVTIGD GTDEPGGTRG RAPSWQIDDG GPGLADAELA RLGERFFRVL
GNDAPGSGLG WSIVRRIARA LGLSVEVERS RRLGGLAVRL RWPEPGARPG GSVAR