Gene Lcho_3011 details

Gene Information

• Locus tag: Lcho_3011
• ID: 6160854
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3325356
• End bp: 3326021
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641665786
• Product: two component transcriptional regulator
• Protein accession: YP_001792036
• Protein GI: 171059687
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 58
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGCATCC TGCTGGTTGA AGACGATCCC CTGCTCGGCG ACGCGCTGCG CGCCGGCCTG 
CGCCAGCAGG GTTTCCAGGT CGACTGGGTG CGCGAGGGGC CGGCCGCCGA ACGCGAGCTG 
CTGACCGGCG CCTACCAGGC CGCGGTGCTC GACCTCGGCC TGCCCGGCAA GGACGGCATC 
GAGGTGCTGG CCGACCTGCG CCGGCGCAAG ATCGCCACCC CGGTGCTGGT GCTGACCGCG 
CGTGCGGCGG TGCGCGACCG GGTGCACTGC CTCGACCTCG GCGCCGACGA CTACGTCGTC 
AAGCCGGTCG ACCTCGACGA ACTGGCCGCC CGCCTGCGCG CGCTGGTGCG GCGCGCCCAC 
GGTCAGGTCG AGGACAACCT GCGGGTCGGA GAGGTCGAGC TGCGCCCGGG CTCGCGCGAC 
GTCTTCTTCC GCGGCGAGCG GATCGCGCTG GCGGTGCGCG AGTTCGACCT GCTGCACGCG 
CTGCTGCTCA ACGCCGGGCG GGTGCTCACG CGAGACCAGA TCGAGCAGCA TCTGTACAGC 
TGGGGCCGCG AGGTCGAGAG CAACGCGATC GAGGTGCACA TCCACCACCT GCGCAAGAAG 
CTCGCGCCCG AGCTGATCGA GACGGTGCGC GGCGTCGGCT ACATGATCGC GCGCGTCGAC 
GGCTGA 

 

Protein sequence

MRILLVEDDP LLGDALRAGL RQQGFQVDWV REGPAAEREL LTGAYQAAVL DLGLPGKDGI 
EVLADLRRRK IATPVLVLTA RAAVRDRVHC LDLGADDYVV KPVDLDELAA RLRALVRRAH 
GQVEDNLRVG EVELRPGSRD VFFRGERIAL AVREFDLLHA LLLNAGRVLT RDQIEQHLYS 
WGREVESNAI EVHIHHLRKK LAPELIETVR GVGYMIARVD G