| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2993 |
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| Symbol | |
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| ID | 6163840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3296856 |
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| End bp | 3298493 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665770 |
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| Product | vinylacetyl-CoA Delta-isomerase |
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| Protein accession | YP_001792020 |
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| Protein GI | 171059671 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2368] Aromatic ring hydroxylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 90 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGCTG CCCCGCCCAC CCGGACCGCC GCCACCGCCG GCCTGATGAC CGCGGTCGAC
TACCGCGAAT CGCTGCGCCG CTTGCGGCCC GTGGTCTACG TCGACGGCCA GCGGATCGAG
TCGGTGGCCG ATGCGCCGAG CCTGCAGCCG GGCATCAACG CGCTGGGCGT CACCTACGAC
CTGGCGCACG ACCCGGCGAT GGCGCGGCTG ATGACGGCGC GCCACACGCG CAGCGGCCGC
ACCGTCAACC GCATGCTGCA CGTCAACGAG TCGGCCGGCG ACCTGCTCGA CAAGCTCGAG
GCGGTGCGCC TGCTGTGCCA GGAAACCGGC TGCGCGCAGC GCTACCTGGC GCACGACGCG
CTCAACGCCA TCGGCCAGGT CAGCGCCCGC ATCGACGACG CCCGCGGCAG CACCGAACAC
CGCGCCCGTT TCGAGGCCTA CCTGCAGCGC GTGCAGACCG AGGACCTGGC GCTGGGCATC
GCGATGACCG ACGCCAAGGG CGACCGCTCG CGCCGCCCGC ACCAGCAGGC CAATCCCGAC
ACCCATGTGC ACGTGGTCGA GCGCAAGCCC CAAGGCATCG TGATCTCGGG CACCAAGGCG
ATCGTCACGG GTGCGCCGTA CATGCACGAG TTCCTCGTCA TGCCCGGTCG CAACATGAGC
CGCGAGGACG CCGATTTCGC GGTCTGCTGC GCGGTGCCGG TGGATGCGCC GGGCATCACC
ATCGTGGCGC GCCCGGCGGG GCGGCCGGGC GAGAAGGTCG AACACGGCGC GCCGCTGTTC
TCGCGCCGCT ACGGGCAGTC GACCGGCGTG GTGATCTTCG ACCGAGTGTT CGTGCCGTGG
GAGCGCGTGT TCTACGCCGG TGAATGGGAG CACTCGGGCA CGCTGACCTA CCACTACGCC
ACCCACCACC GCCACAGCTG CATCGGTGCG CGGGCCGGTT TCGGCGACCT GCTGATCGGC
GCGGGCGCGC TGATGTGCGA GGCCAACGGC TTCGACCCAG GCCAGACGTC GAGCCTGCGC
GAGCCGATGG TCGAGCTGAT CAAGATCACC GAAGGCTTCT TCGCCTGCGG CGTGGCGGCC
AGCGTCTACG GCACGGCCGA TCAACACAGC GGGACCTTCA TGCCCGAGCC GGTGTTCGCC
AACATCGGCA AGCTGCTGCT GGCCACGCAG ATCTACGACA TGCACCGGCT CGCGCACGAG
GTCTCGGGCG GCCTGATCGT GGCGCTGCCC GGGCCCGACG AGGACCACAA CCCGGCTACC
GCCGCCACGC TGGCCGAGGT GCTGCGCGCC AATCCGGCGG TGCCCTACGA CAAGCGCATC
GAGGTGGCGC GCTTCGTCGA GGACCTGACG GCGTCGTACC AAGCCGGCTG GTATTCGGTC
ATCAGCCTGC ACGGCGGCGG CTCGCCGGCG GCGATGAAGC AGGAGATCTG GCGCAACTAC
CCGCTGGGCA ACAAGGTCGA TCTGGTCGAG CGCCTGCTCG ACCGTGGCGT GCTCGCGCCC
ACCGAAGGCG GCGACACCCG CGCCATCACC CGCAACCGCC AGCCCGGGCG CTGCTGCGAC
AGCGGCTGCA CGCAGCCCGG CCAGGCGGTG ATGGTGGCCT TGCCGGTGTC GACGCGTGAC
GATGTCGCAG GCGCCTAG
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| Protein sequence | MHAAPPTRTA ATAGLMTAVD YRESLRRLRP VVYVDGQRIE SVADAPSLQP GINALGVTYD
LAHDPAMARL MTARHTRSGR TVNRMLHVNE SAGDLLDKLE AVRLLCQETG CAQRYLAHDA
LNAIGQVSAR IDDARGSTEH RARFEAYLQR VQTEDLALGI AMTDAKGDRS RRPHQQANPD
THVHVVERKP QGIVISGTKA IVTGAPYMHE FLVMPGRNMS REDADFAVCC AVPVDAPGIT
IVARPAGRPG EKVEHGAPLF SRRYGQSTGV VIFDRVFVPW ERVFYAGEWE HSGTLTYHYA
THHRHSCIGA RAGFGDLLIG AGALMCEANG FDPGQTSSLR EPMVELIKIT EGFFACGVAA
SVYGTADQHS GTFMPEPVFA NIGKLLLATQ IYDMHRLAHE VSGGLIVALP GPDEDHNPAT
AATLAEVLRA NPAVPYDKRI EVARFVEDLT ASYQAGWYSV ISLHGGGSPA AMKQEIWRNY
PLGNKVDLVE RLLDRGVLAP TEGGDTRAIT RNRQPGRCCD SGCTQPGQAV MVALPVSTRD
DVAGA
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