| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2974 |
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| Symbol | |
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| ID | 6160599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3279829 |
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| End bp | 3281070 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641665750 |
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| Product | polyhydroxyalkanoate depolymerase, intracellular |
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| Protein accession | YP_001792001 |
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| Protein GI | 171059652 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
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| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 78 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTACC AGCTCTATGA AGCCCAACGC GCTGTGCTGA GCCCGTTCGC CGAGTTCGCC
ACGGCCACGG CCAAGCTTTA CAGCCATCCG CAATCGCCGT TCTCGACGGC ACCGGGTTCG
CAGCGCGTGT CGGCCGGTTT CGACCTGCTG CATCGCCTGA CCAAGGAATA CGAGAAGCCC
GCCTTCGACA TCACGTCGGG CAAGGTCGAC GGTGTCGACG TGGCGATCCA GGAACAGCTG
GTCGAGGTGC GCCCCTTCTG CCGCCTGCTG CGCTTCAAGC GCTACACCGA CAACATCCAG
GTGCTCGAGC GCATGCGCGC GCAGCCGTCG GTGCTGGTGG TGGCGCCGTT GTCGGGCCAC
CACTCGACCC TGCTGCGCGA CACCGTGCGC ACCCTGCTGC AGGACCACAA GGTCTACATC
ACCGACTGGG TCGATGCCCG CATGGTGCCG CTGGCCGACG GCGAGTTCCA CCTCGACGAC
TACATCGGCT ACATCCAGGA TTTCATCCGC AAGCTCGGCC CCGACATCAA CGTGATCTCG
GTCTGCCAGC CGACCGTCCC GGTGCTGGCC GCGATCTCGC TGATGGCCTC TGCCGGCGAG
GCCACGCCGC GCACGATGAC GATGATGGGC GGCCCGATCG ACGCCCGCAA GAGCCCGACC
GCGGTCAACA ACCTGGCGCT CAACCGCAGC CACGAGTGGT TCGAGCACAA CGTGATCTAC
CGCGTGCCGC AGAACTACCC GGGCGCCGGC CGCCGCGTCT ACCCGGGGTT CATGCAGCAC
ACCGGCTTCG TCGCGATGAA CCCGGACCGC CACGTCAACT CGCACTACGA CTACTTCCTC
GACCTGGTGC GCGGCGACGA CGACAGCGTC GAGGCGCACC GCAAGTTCTA CGACGAATAC
AACGCCGTGC TCGACATGCC GGCCGAGTAC TACCTCGACA CCATCAAGAC GGTGTTCCAG
GACTTCGCCC TGGTGCACGG CACCTGGGTC GTGCGGGGCA AGCCGGTGCG TCCGCAGGAC
ATCACCGCCA CCGCGCTGCT GTCGGTCGAG GGCGAGCTCG ACGACATCTC GGGTGCCGGC
CAGACCGAAG CCGCGCAGCA CCTGTGCAGC GGCATCCCGG AAAGCATGCG CCAGCACTAC
ACGGTCGAAG GCGCCGGTCA CTACGGCATC TTCTCGGGCC GCCGCTGGCG CGAGATGGCC
TATCCTCAGG TTCGCGACTT CATCCTCGCT CACCAGCGTT GA
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| Protein sequence | MLYQLYEAQR AVLSPFAEFA TATAKLYSHP QSPFSTAPGS QRVSAGFDLL HRLTKEYEKP
AFDITSGKVD GVDVAIQEQL VEVRPFCRLL RFKRYTDNIQ VLERMRAQPS VLVVAPLSGH
HSTLLRDTVR TLLQDHKVYI TDWVDARMVP LADGEFHLDD YIGYIQDFIR KLGPDINVIS
VCQPTVPVLA AISLMASAGE ATPRTMTMMG GPIDARKSPT AVNNLALNRS HEWFEHNVIY
RVPQNYPGAG RRVYPGFMQH TGFVAMNPDR HVNSHYDYFL DLVRGDDDSV EAHRKFYDEY
NAVLDMPAEY YLDTIKTVFQ DFALVHGTWV VRGKPVRPQD ITATALLSVE GELDDISGAG
QTEAAQHLCS GIPESMRQHY TVEGAGHYGI FSGRRWREMA YPQVRDFILA HQR
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