Gene Lcho_2959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2959 
Symbol 
ID6160398 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3258702 
End bp3260579 
Gene Length1878 bp 
Protein Length625 aa 
Translation table11 
GC content70% 
IMG OID641665737 
ProductNERD domain-containing protein 
Protein accessionYP_001791988 
Protein GI171059639 
COG category[R] General function prediction only 
COG ID[COG3972] Superfamily I DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCATCT TCCCGCAGGG ATTGACGAAC ATCTCGCAAC GCTGCCGCAA CACCGAAGAC 
GGTGGCGCCG AGCGGCGCGT GCTGGTGCAG CTGCAACTCT GCCTCGAAGA CGACTACCTC
GTCTGGCACA ACATCCCGGT CGGGACGAAG GGGCGACAGC CCGATTTCGT GATCCTGCAC
CCGGGCCGCG GGCTGCTGGT CCTGGAGGTC AAGGGCTGGC GCGCCGGCAG CCTGCGCAAC
GCCACGCGCA ACGACATCAG CCTGGCGACG CAGCGCGGCC TCGTGAACTG CATCCACCCG
GAGCTGCAGG CACGCGGCTA CGCCACCGAG CTGGTCAACC AGATGCAGCG CGACCCGGGC
CTGTGCCATG CCGAAGGCCG CTGGGCCAAC AAGCTGATCA CGCCCTACGG CTGGGGCTCG
GTGCTGGCCA ACATCGAGCG CAAGAAGATC ACCGACGAAG CCTGGGACGA GATCTTTGCG
GTCTCGCGCA CGCTGACGCG CGAAGACCTC GATGAGAGCG TCGACCCGGG CGCCTTCCAG
GACCGGCTCT GGGGCATGTT CACCGTCAAC GTCAAGCACA CGCTGACCCT GCCGCAGCGT
GACCGCGTGC GCTGGCACCT GTTTCCCGAG ATCCGCATCC AGACCCAGGC CTCGCTGCTC
GACGAGGCCG ACGAGACGCC GGCCCCCTCG CCCGCCGACG AACTGCTGCA GGTGATGGAC
CTGCAGCAGG AAACGCTGGC CCGGTCGCTC GGCGACGGCC ACCGCGTCGT GCACGGCGTG
GCGGGCTCGG GCAAGACGAT GCTGCTGGTC TACCGCGCCA TGCAGCTGGC GGCGGCGGCC
AAGCCGGAGC GGCCGATCCT GGTGCTTTGC TACAACCGGC CGCTCTCGGC CCGCATCGAC
GCCCTGCTGC GCCAGCGTGG CGTCGACGAA CGGGTGCAGG TGCGCACCTT CCACAGCTGG
TGCGAGGAGA TGGTGCGCGC CTACCAGCTG GCGGTGCCGG TGCACCGGCA GGACCGCAAC
TACTGCGACG CGATGGTCGA CACCGTCATC CAGGCCATCG ATCACGGCCG CGTGCCGCGG
GCCCAGTACT GCGCGCTGAT GATCGACGAG GCGCATGATT TCGAGGACGC CTGGCTGCGG
CTGGCGCCCC AGCTGATCGA CCCCGACACC CGCTCGCTGC TGGTGCTCTA CGACGACGCG
CAGTCGATCT ACCGCAAGCC GCGCCGCAAC TTCAGCTTCG CCAGCGTCGG CATCGAGGCG
CGCGGGCGCA CCAGCGTGCT CAAGGTCAAC TACCGCAACA CCAGCGAGGT GCTGGCCCTG
GCCACGCGCA CGGCCGGCCA GTTGCTGAGC GGCGCCAACC CCGGCGCCGA CGACGAGATC
GCCCACCTCG CGCCGATGGC CGGCGGCCGC CGCGGCCCGG TGCCCGAGCT GATGCGGGCC
CGCAGCGCCC GCGAAGAAGC CGACCTGATC GCCGAGCGCC TGGGCGATGC GCTGGCCGAC
GGCGTGCATC CGAGCGACAT CGGCATCCTG GCGCGCCGCC ACGATCTGCT CGATGCGGTC
GAGGCCGCGC TGCGCGAGCG TGGCATCGCG TCGCAGCGGC TCAAGGGCCC GCAAGGCCGG
GCCTGGGCGG CCGACAGCAT CAAGCTGACC ACCTTGCATG CATCGAAAGG CCTCGAGTTC
CACACCGTGG CCATCGTCGG CCTGCAGGCC GTGCCCGACG CACGCCAGGC CGCCGACGAA
GAGTGGCGGC TGCTGTACGT GGCGATGACG CGGGCGACCC ACCGGCTGGT GCTGTCGGGC
TGCGGCGACT CGTTGGCCGT CAAGCGGGTC GGCGAGGCGT TGAGCCAGTT GGGGCAGGCG
TTTCAGGAAG CGGCTTGA
 
Protein sequence
MAIFPQGLTN ISQRCRNTED GGAERRVLVQ LQLCLEDDYL VWHNIPVGTK GRQPDFVILH 
PGRGLLVLEV KGWRAGSLRN ATRNDISLAT QRGLVNCIHP ELQARGYATE LVNQMQRDPG
LCHAEGRWAN KLITPYGWGS VLANIERKKI TDEAWDEIFA VSRTLTREDL DESVDPGAFQ
DRLWGMFTVN VKHTLTLPQR DRVRWHLFPE IRIQTQASLL DEADETPAPS PADELLQVMD
LQQETLARSL GDGHRVVHGV AGSGKTMLLV YRAMQLAAAA KPERPILVLC YNRPLSARID
ALLRQRGVDE RVQVRTFHSW CEEMVRAYQL AVPVHRQDRN YCDAMVDTVI QAIDHGRVPR
AQYCALMIDE AHDFEDAWLR LAPQLIDPDT RSLLVLYDDA QSIYRKPRRN FSFASVGIEA
RGRTSVLKVN YRNTSEVLAL ATRTAGQLLS GANPGADDEI AHLAPMAGGR RGPVPELMRA
RSAREEADLI AERLGDALAD GVHPSDIGIL ARRHDLLDAV EAALRERGIA SQRLKGPQGR
AWAADSIKLT TLHASKGLEF HTVAIVGLQA VPDARQAADE EWRLLYVAMT RATHRLVLSG
CGDSLAVKRV GEALSQLGQA FQEAA