Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2959 |
Symbol | |
ID | 6160398 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3258702 |
End bp | 3260579 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641665737 |
Product | NERD domain-containing protein |
Protein accession | YP_001791988 |
Protein GI | 171059639 |
COG category | [R] General function prediction only |
COG ID | [COG3972] Superfamily I DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCATCT TCCCGCAGGG ATTGACGAAC ATCTCGCAAC GCTGCCGCAA CACCGAAGAC GGTGGCGCCG AGCGGCGCGT GCTGGTGCAG CTGCAACTCT GCCTCGAAGA CGACTACCTC GTCTGGCACA ACATCCCGGT CGGGACGAAG GGGCGACAGC CCGATTTCGT GATCCTGCAC CCGGGCCGCG GGCTGCTGGT CCTGGAGGTC AAGGGCTGGC GCGCCGGCAG CCTGCGCAAC GCCACGCGCA ACGACATCAG CCTGGCGACG CAGCGCGGCC TCGTGAACTG CATCCACCCG GAGCTGCAGG CACGCGGCTA CGCCACCGAG CTGGTCAACC AGATGCAGCG CGACCCGGGC CTGTGCCATG CCGAAGGCCG CTGGGCCAAC AAGCTGATCA CGCCCTACGG CTGGGGCTCG GTGCTGGCCA ACATCGAGCG CAAGAAGATC ACCGACGAAG CCTGGGACGA GATCTTTGCG GTCTCGCGCA CGCTGACGCG CGAAGACCTC GATGAGAGCG TCGACCCGGG CGCCTTCCAG GACCGGCTCT GGGGCATGTT CACCGTCAAC GTCAAGCACA CGCTGACCCT GCCGCAGCGT GACCGCGTGC GCTGGCACCT GTTTCCCGAG ATCCGCATCC AGACCCAGGC CTCGCTGCTC GACGAGGCCG ACGAGACGCC GGCCCCCTCG CCCGCCGACG AACTGCTGCA GGTGATGGAC CTGCAGCAGG AAACGCTGGC CCGGTCGCTC GGCGACGGCC ACCGCGTCGT GCACGGCGTG GCGGGCTCGG GCAAGACGAT GCTGCTGGTC TACCGCGCCA TGCAGCTGGC GGCGGCGGCC AAGCCGGAGC GGCCGATCCT GGTGCTTTGC TACAACCGGC CGCTCTCGGC CCGCATCGAC GCCCTGCTGC GCCAGCGTGG CGTCGACGAA CGGGTGCAGG TGCGCACCTT CCACAGCTGG TGCGAGGAGA TGGTGCGCGC CTACCAGCTG GCGGTGCCGG TGCACCGGCA GGACCGCAAC TACTGCGACG CGATGGTCGA CACCGTCATC CAGGCCATCG ATCACGGCCG CGTGCCGCGG GCCCAGTACT GCGCGCTGAT GATCGACGAG GCGCATGATT TCGAGGACGC CTGGCTGCGG CTGGCGCCCC AGCTGATCGA CCCCGACACC CGCTCGCTGC TGGTGCTCTA CGACGACGCG CAGTCGATCT ACCGCAAGCC GCGCCGCAAC TTCAGCTTCG CCAGCGTCGG CATCGAGGCG CGCGGGCGCA CCAGCGTGCT CAAGGTCAAC TACCGCAACA CCAGCGAGGT GCTGGCCCTG GCCACGCGCA CGGCCGGCCA GTTGCTGAGC GGCGCCAACC CCGGCGCCGA CGACGAGATC GCCCACCTCG CGCCGATGGC CGGCGGCCGC CGCGGCCCGG TGCCCGAGCT GATGCGGGCC CGCAGCGCCC GCGAAGAAGC CGACCTGATC GCCGAGCGCC TGGGCGATGC GCTGGCCGAC GGCGTGCATC CGAGCGACAT CGGCATCCTG GCGCGCCGCC ACGATCTGCT CGATGCGGTC GAGGCCGCGC TGCGCGAGCG TGGCATCGCG TCGCAGCGGC TCAAGGGCCC GCAAGGCCGG GCCTGGGCGG CCGACAGCAT CAAGCTGACC ACCTTGCATG CATCGAAAGG CCTCGAGTTC CACACCGTGG CCATCGTCGG CCTGCAGGCC GTGCCCGACG CACGCCAGGC CGCCGACGAA GAGTGGCGGC TGCTGTACGT GGCGATGACG CGGGCGACCC ACCGGCTGGT GCTGTCGGGC TGCGGCGACT CGTTGGCCGT CAAGCGGGTC GGCGAGGCGT TGAGCCAGTT GGGGCAGGCG TTTCAGGAAG CGGCTTGA
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Protein sequence | MAIFPQGLTN ISQRCRNTED GGAERRVLVQ LQLCLEDDYL VWHNIPVGTK GRQPDFVILH PGRGLLVLEV KGWRAGSLRN ATRNDISLAT QRGLVNCIHP ELQARGYATE LVNQMQRDPG LCHAEGRWAN KLITPYGWGS VLANIERKKI TDEAWDEIFA VSRTLTREDL DESVDPGAFQ DRLWGMFTVN VKHTLTLPQR DRVRWHLFPE IRIQTQASLL DEADETPAPS PADELLQVMD LQQETLARSL GDGHRVVHGV AGSGKTMLLV YRAMQLAAAA KPERPILVLC YNRPLSARID ALLRQRGVDE RVQVRTFHSW CEEMVRAYQL AVPVHRQDRN YCDAMVDTVI QAIDHGRVPR AQYCALMIDE AHDFEDAWLR LAPQLIDPDT RSLLVLYDDA QSIYRKPRRN FSFASVGIEA RGRTSVLKVN YRNTSEVLAL ATRTAGQLLS GANPGADDEI AHLAPMAGGR RGPVPELMRA RSAREEADLI AERLGDALAD GVHPSDIGIL ARRHDLLDAV EAALRERGIA SQRLKGPQGR AWAADSIKLT TLHASKGLEF HTVAIVGLQA VPDARQAADE EWRLLYVAMT RATHRLVLSG CGDSLAVKRV GEALSQLGQA FQEAA
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